[package - 121powerpc64-quarterly][biology/py-scikit-bio] Failed for py37-scikit-bio-0.5.6 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Dec 1 15:36:50 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: branches/2020Q4/biology/py-scikit-bio/Makefile 549974 2020-09-24 23:16:26Z yuri $
Log URL: http://pylon.nyi.freebsd.org/data/121powerpc64-quarterly/556693/logs/py37-scikit-bio-0.5.6.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=121powerpc64-quarterly&build=556693
Log:
=>> Building biology/py-scikit-bio
build started at Tue Dec 1 15:35:19 UTC 2020
port directory: /usr/ports/biology/py-scikit-bio
package name: py37-scikit-bio-0.5.6
building for: FreeBSD 121powerpc64-quarterly-job-03 12.1-RELEASE-p10 FreeBSD 12.1-RELEASE-p10 1201000 powerpc
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2020Q4/biology/py-scikit-bio/Makefile 549974 2020-09-24 23:16:26Z yuri $
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
Jail OSVERSION: 1201000
Job Id: 03
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1201000
UNAME_v=FreeBSD 12.1-RELEASE-p10 1201000
UNAME_r=12.1-RELEASE-p10
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=121powerpc64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py37
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py37
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37 HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37 HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/scikit-bio" EXAMPLESDIR="share/examples/scikit-bio" DATADIR="share/scikit-bio" WWWDIR="www/scikit-bio" ETCDIR="etc/scikit-bio"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-bio DOCSDIR=/usr/local/share/doc/scikit-bio EXAMPLESDIR=/usr/local/share/examples/scikit-bio WWWDIR=/usr/local/www/scikit-bio ETCDIR=/usr/local/etc/scikit-bio
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
PPC_ABI=ELFv1
OPSYS=FreeBSD
_OSRELEASE=12.1-RELEASE-p10
OSREL=12.1
OSVERSION=1201000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py37-scikit-bio-0.5.6 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.10.txz
[121powerpc64-quarterly-job-03] Installing pkg-1.15.10...
[121powerpc64-quarterly-job-03] Extracting pkg-1.15.10: .......... done
===> py37-scikit-bio-0.5.6 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py37-scikit-bio-0.5.6
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py37-scikit-bio-0.5.6 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py37-scikit-bio-0.5.6 for building
=> SHA256 Checksum OK for scikit-bio-0.5.6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py37-scikit-bio-0.5.6 for building
===> Extracting for py37-scikit-bio-0.5.6
=> SHA256 Checksum OK for scikit-bio-0.5.6.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py37-scikit-bio-0.5.6
===========================================================================
=======================<phase: build-depends >============================
===> py37-scikit-bio-0.5.6 depends on package: py37-numpy>=1.16,1<1.20,1 - not found
===> Installing existing package /packages/All/py37-numpy-1.16.6,1.txz
[121powerpc64-quarterly-job-03] Installing py37-numpy-1.16.6,1...
[121powerpc64-quarterly-job-03] `-- Installing gcc9-9.3.0_1...
[121powerpc64-quarterly-job-03] | `-- Installing binutils-2.33.1_4,1...
[121powerpc64-quarterly-job-03] | | `-- Installing gettext-runtime-0.21...
[121powerpc64-quarterly-job-03] | | `-- Installing indexinfo-0.3.1...
[121powerpc64-quarterly-job-03] | | `-- Extracting indexinfo-0.3.1: .... done
[121powerpc64-quarterly-job-03] | | `-- Extracting gettext-runtime-0.21: .......... done
[121powerpc64-quarterly-job-03] | `-- Extracting binutils-2.33.1_4,1: .......... done
[121powerpc64-quarterly-job-03] | `-- Installing gmp-6.2.0...
[121powerpc64-quarterly-job-03] | `-- Extracting gmp-6.2.0: .......... done
[121powerpc64-quarterly-job-03] | `-- Installing mpc-1.1.0_2...
[121powerpc64-quarterly-job-03] | | `-- Installing mpfr-4.1.0...
[121powerpc64-quarterly-job-03] | | `-- Extracting mpfr-4.1.0: .......... done
[121powerpc64-quarterly-job-03] | `-- Extracting mpc-1.1.0_2: ......... done
[121powerpc64-quarterly-job-03] `-- Extracting gcc9-9.3.0_1: .......... done
[121powerpc64-quarterly-job-03] `-- Installing openblas-0.3.10,1...
[121powerpc64-quarterly-job-03] `-- Extracting openblas-0.3.10,1: .......... done
[121powerpc64-quarterly-job-03] `-- Installing py37-setuptools-44.0.0...
[121powerpc64-quarterly-job-03] | `-- Installing python37-3.7.9...
<snip>
copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_multi_records -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_single_record -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_seq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_rna -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/empty -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/io/format/tests/data
running build_ext
building 'skbio.metadata._intersection' extension
creating build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7
creating build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio
creating build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/metadata
cc -Wsign-compare -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c skbio/metadata/_intersection.c -o build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/metadata/_intersection.o
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/metadata/_intersection.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/metadata/_intersection.so
building 'skbio.stats.__subsample' extension
creating build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/stats
cc -Wsign-compare -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c skbio/stats/__subsample.c -o build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/stats/__subsample.o
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from skbio/stats/__subsample.c:617:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/stats/__subsample.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/stats/__subsample.so
building 'skbio.alignment._ssw_wrapper' extension
creating build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/alignment
creating build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/alignment/_lib
cc -Wsign-compare -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c skbio/alignment/_ssw_wrapper.c -o build/temp.freebsd-12.1-RELEASE-p10-powerpc-3.7/skbio/alignment/_ssw_wrapper.o -Wno-error=declaration-after-statement
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from skbio/alignment/_ssw_wrapper.c:624:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
In file included from skbio/alignment/_ssw_wrapper.c:626:
skbio/alignment/_lib/ssw.h:17:23: error: emmintrin.h: No such file or directory
error: command 'cc' failed with exit status 1
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/py-scikit-bio
More information about the freebsd-pkg-fallout
mailing list