[package - 121powerpc64-quarterly][biology/freebayes] Failed for freebayes-1.2.0_3 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Dec 1 04:21:43 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb at FreeBSD.org
Last committer: se at FreeBSD.org
Ident: $FreeBSD: branches/2020Q4/biology/freebayes/Makefile 549476 2020-09-21 18:14:57Z se $
Log URL: http://pylon.nyi.freebsd.org/data/121powerpc64-quarterly/556693/logs/freebayes-1.2.0_3.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=121powerpc64-quarterly&build=556693
Log:
=>> Building biology/freebayes
build started at Tue Dec 1 03:52:32 UTC 2020
port directory: /usr/ports/biology/freebayes
package name: freebayes-1.2.0_3
building for: FreeBSD 121powerpc64-quarterly-job-04 12.1-RELEASE-p10 FreeBSD 12.1-RELEASE-p10 1201000 powerpc
maintained by: jwb at FreeBSD.org
Makefile ident: $FreeBSD: branches/2020Q4/biology/freebayes/Makefile 549476 2020-09-21 18:14:57Z se $
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
Jail OSVERSION: 1201000
Job Id: 04
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1201000
UNAME_v=FreeBSD 12.1-RELEASE-p10 1201000
UNAME_r=12.1-RELEASE-p10
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=121powerpc64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/121powerpc64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jwb at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc9" CFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -fno-strict-aliasing " CPP="cpp9" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -
L/usr/local/lib/gcc9 " LIBS="" CXX="g++9" CXXFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 --std=c++11 -Wl,-rpath=/usr/local/lib/gcc9 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/freebayes" EXAMPLESDIR="share/examples/freebayes" DATADIR="share/freebayes" WWWDIR="www/freebayes" ETCDIR="etc/freebayes"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/freebayes DOCSDIR=/usr/local/share/doc/freebayes EXAMPLESDIR=/usr/local/share/examples/freebayes WWWDIR=/usr/local/www/freebayes ETCDIR=/usr/local/etc/freebayes
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
PPC_ABI=ELFv1
OPSYS=FreeBSD
_OSRELEASE=12.1-RELEASE-p10
OSREL=12.1
OSVERSION=1201000
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> freebayes-1.2.0_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.10.txz
[121powerpc64-quarterly-job-04] Installing pkg-1.15.10...
[121powerpc64-quarterly-job-04] Extracting pkg-1.15.10: .......... done
===> freebayes-1.2.0_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of freebayes-1.2.0_3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_3 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_3 for building
=> SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-vcflib-5e3ce04_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-c68cebb_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz.
=> SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-b704f19_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-multichoose-73d35da_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-smithwaterman-84c08d7_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-tabixpp-80012f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-0f298ce_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_3 for building
===> Extracting for freebayes-1.2.0_3
=> SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-vcflib-5e3ce04_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-c68cebb_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz.
=> SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-b704f19_GH0.tar.gz.
<snip>
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h: In function '_mm_shuffle_epi32':
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2160:9: error: expected ';' before 't'
2160 | __v4su t;
| ^~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2162:3: error: 't' undeclared (first use in this function)
2162 | t[0] = permute_selectors[element_selector_10];
| ^
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2166:37: error: expected ')' before '__A'
2166 | return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
| ^~~~
| )
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2166:29: error: incompatible type for argument 1 of '__builtin_vec_perm'
2166 | return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
| ^~~~~~~~
| |
| int
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2166:29: note: expected '__vector(4) int' but argument is of type 'int'
In file included from /usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:62,
from ksw.c:29:
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2166:19: error: too few arguments to function '__builtin_vec_perm'
2166 | return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
| ^~~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h: In function '_mm_maskmoveu_si128':
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2172:9: error: expected ';' before 'hibit'
2172 | __v2du hibit = { 0x7f7f7f7f7f7f7f7fUL, 0x7f7f7f7f7f7f7f7fUL};
| ^~~~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2173:10: error: expected ';' before 'mask'
2173 | __v16qu mask, tmp;
| ^~~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2176:3: error: 'tmp' undeclared (first use in this function)
2176 | tmp = (__v16qu)_mm_loadu_si128(p);
| ^~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2176:18: error: expected ';' before '_mm_loadu_si128'
2176 | tmp = (__v16qu)_mm_loadu_si128(p);
| ^~~~~~~~~~~~~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2177:3: error: 'mask' undeclared (first use in this function)
2177 | mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit);
| ^~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2177:19: error: expected ';' before '__builtin_vec_cmpgt'
2177 | mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit);
| ^
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2178:32: error: expected ')' before '__A'
2178 | tmp = vec_sel (tmp, (__v16qu)__A, mask);
| ^~~
| )
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h: In function '_mm_avg_epu8':
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2185:38: error: expected ')' before '__A'
2185 | return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
| ^~~
| )
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2185:29: error: incompatible type for argument 1 of '__builtin_vec_avg'
2185 | return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
| ^~~~~~~~~
| |
| unsigned char
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2185:29: note: expected '__vector(4) int' but argument is of type 'unsigned char'
In file included from /usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:62,
from ksw.c:29:
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2185:20: error: too few arguments to function '__builtin_vec_avg'
2185 | return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
| ^~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h: In function '_mm_avg_epu16':
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2191:37: error: expected ')' before '__A'
2191 | return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
| ^~~
| )
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2191:29: error: incompatible type for argument 1 of '__builtin_vec_avg'
2191 | return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
| ^~~~~~~~
| |
| short unsigned int
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2191:29: note: expected '__vector(4) int' but argument is of type 'short unsigned int'
In file included from /usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:62,
from ksw.c:29:
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2191:20: error: too few arguments to function '__builtin_vec_avg'
2191 | return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
| ^~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h: In function '_mm_sad_epu8':
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2198:10: error: expected ';' before 'a'
2198 | __v16qu a, b;
| ^~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2199:10: error: expected ';' before 'vmin'
2199 | __v16qu vmin, vmax, vabsdiff;
| ^~~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2200:9: error: expected ';' before 'vsum'
2200 | __v4si vsum;
| ^~~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2201:16: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'zero'
2201 | const __v4su zero = { 0, 0, 0, 0 };
| ^~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2201:16: error: 'zero' undeclared (first use in this function)
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2201:23: error: expected expression before '{' token
2201 | const __v4su zero = { 0, 0, 0, 0 };
| ^
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2202:9: error: expected ';' before 'result'
2202 | __v4si result;
| ^~~~~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2204:3: error: 'a' undeclared (first use in this function)
2204 | a = (__v16qu) __A;
| ^
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2204:16: error: expected ';' before '__A'
2204 | a = (__v16qu) __A;
| ^~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2205:3: error: 'b' undeclared (first use in this function)
2205 | b = (__v16qu) __B;
| ^
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2205:16: error: expected ';' before '__B'
2205 | b = (__v16qu) __B;
| ^~~~
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2206:3: error: 'vmin' undeclared (first use in this function)
2206 | vmin = vec_min (a, b);
| ^~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2207:3: error: 'vmax' undeclared (first use in this function)
2207 | vmax = vec_max (a, b);
| ^~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2208:3: error: 'vabsdiff' undeclared (first use in this function)
2208 | vabsdiff = vec_sub (vmax, vmin);
| ^~~~~~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2210:3: error: 'vsum' undeclared (first use in this function)
2210 | vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
| ^~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2210:11: error: '__vector' undeclared (first use in this function); did you mean 'vector'?
2210 | vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
| ^~~~~~~~
| vector
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2210:19: error: expected ')' before 'signed'
2210 | vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
| ~ ^~~~~~~
| )
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2210:31: error: expected ';' before '__builtin_vec_sum4s'
2210 | vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
| ^
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2212:3: error: 'result' undeclared (first use in this function)
2212 | result = vec_sum2s (vsum, (__vector signed int) zero);
| ^~~~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2212:38: error: expected ')' before 'signed'
2212 | result = vec_sum2s (vsum, (__vector signed int) zero);
| ~ ^~~~~~~
| )
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2212:50: error: expected ')' before 'zero'
2212 | result = vec_sum2s (vsum, (__vector signed int) zero);
| ^~~~~
| )
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h: In function '_mm_cvtsi64_si128':
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2310:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size
2310 | return __extension__ (__m128i)(__v2di){ __A, 0LL };
| ^~~~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2310:41: error: expected ';' before '{' token
2310 | return __extension__ (__m128i)(__v2di){ __A, 0LL };
| ^
| ;
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h: In function '_mm_cvtsi64x_si128':
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2317:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size
2317 | return __extension__ (__m128i)(__v2di){ __A, 0LL };
| ^~~~~~
/usr/local/lib/gcc9/gcc/powerpc64-portbld-freebsd12.1/9.3.0/include/emmintrin.h:2317:41: error: expected ';' before '{' token
2317 | return __extension__ (__m128i)(__v2di){ __A, 0LL };
| ^
| ;
ksw.c: In function 'ksw_u8':
ksw.c:185:11: warning: implicit declaration of function '_mm_movemask_epi8'; did you mean '_mm_movemask_pi8'? [-Wimplicit-function-declaration]
185 | cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero));
| ^~~~~~~~~~~~~~~~~
| _mm_movemask_pi8
ksw.c:185:5: error: AltiVec argument passed to unprototyped function
185 | cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero));
| ^~~
ksw.c: In function 'ksw_i16':
ksw.c:293:5: error: AltiVec argument passed to unprototyped function
293 | if(UNLIKELY(!_mm_movemask_epi8(_mm_cmpgt_epi16(f, h)))) goto end_loop8;
| ^~
gmake[5]: *** [Makefile:26: ksw.o] Error 1
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/bwa'
gmake[4]: *** [Makefile:358: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[3]: *** [Makefile:299: all] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[2]: *** [Makefile:53: ../SeqLib/src/libseqlib.a] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/src'
gmake[1]: *** [Makefile:2: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/freebayes
More information about the freebsd-pkg-fallout
mailing list