[package - head-amd64-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-21.0.0_2 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sat Sep 26 02:52:39 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: zeising at FreeBSD.org
Ident: $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 516742 2019-11-04 21:08:20Z zeising $
Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p549877_s366096/logs/ncbi-cxx-toolkit-21.0.0_2.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p549877_s366096
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Sat Sep 26 02:52:21 UTC 2020
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-21.0.0_2
building for: FreeBSD head-amd64-default-job-04 13.0-CURRENT FreeBSD 13.0-CURRENT 1300117 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 516742 2019-11-04 21:08:20Z zeising $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300100
Jail OSVERSION: 1300117
Job Id: 04
!!! Jail is newer than host. (Jail: 1300117, Host: 1300100) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300117
UNAME_v=FreeBSD 13.0-CURRENT 1300117
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--without-debug --with-dll --without-static --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.0 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ncbi-cxx-toolkit" EXAMPLESDIR="share/examples/ncbi-cxx-toolkit" DATADIR="share/ncbi-cxx-toolkit" WWWDIR="www/ncbi-cxx-toolkit" ETCDIR="etc/ncbi-cxx-toolkit"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-cxx-toolkit DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-91-g6e042866c30) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-91-g6e042866c30) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-91-g6e042866c30) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300117
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.6.txz
[head-amd64-default-job-04] Installing pkg-1.15.6...
[head-amd64-default-job-04] Extracting pkg-1.15.6: .......... done
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building
===> Extracting for ncbi-cxx-toolkit-21.0.0_2
=> SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ncbi-cxx-toolkit-21.0.0_2
===> Applying FreeBSD patches for ncbi-cxx-toolkit-21.0.0_2 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===> ncbi-cxx-toolkit-21.0.0_2 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[head-amd64-default-job-04] Installing gmake-4.3_2...
[head-amd64-default-job-04] `-- Installing gettext-runtime-0.21...
[head-amd64-default-job-04] | `-- Installing indexinfo-0.3.1...
[head-amd64-default-job-04] | `-- Extracting indexinfo-0.3.1: .... done
[head-amd64-default-job-04] `-- Extracting gettext-runtime-0.21: .......... done
[head-amd64-default-job-04] Extracting gmake-4.3_2: .......... done
===> ncbi-cxx-toolkit-21.0.0_2 depends on package: gmake>=4.3 - found
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/bin/python3.7 - not found
===> Installing existing package /packages/All/python37-3.7.9.txz
[head-amd64-default-job-04] Installing python37-3.7.9...
[head-amd64-default-job-04] `-- Installing libffi-3.3_1...
[head-amd64-default-job-04] `-- Extracting libffi-3.3_1: .......... done
[head-amd64-default-job-04] `-- Installing readline-8.0.4...
[head-amd64-default-job-04] `-- Extracting readline-8.0.4: .......... done
[head-amd64-default-job-04] Extracting python37-3.7.9: .......... done
=====
Message from python37-3.7.9:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py37-gdbm databases/py-gdbm at py37
py37-sqlite3 databases/py-sqlite3 at py37
py37-tkinter x11-toolkits/py-tkinter at py37
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/bin/python3.7 - found
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===> ncbi-cxx-toolkit-21.0.0_2 depends on package: perl5>=5.32.r0<5.33 - not found
===> Installing existing package /packages/All/perl5-5.32.0.txz
[head-amd64-default-job-04] Installing perl5-5.32.0...
[head-amd64-default-job-04] Extracting perl5-5.32.0: .......... done
===> ncbi-cxx-toolkit-21.0.0_2 depends on package: perl5>=5.32.r0<5.33 - found
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===> Installing existing package /packages/All/libX11-1.6.12,1.txz
[head-amd64-default-job-04] Installing libX11-1.6.12,1...
[head-amd64-default-job-04] `-- Installing libxcb-1.14_1...
[head-amd64-default-job-04] | `-- Installing libXau-1.0.9...
[head-amd64-default-job-04] | `-- Extracting libXau-1.0.9: .......... done
[head-amd64-default-job-04] | `-- Installing libXdmcp-1.1.3...
[head-amd64-default-job-04] | | `-- Installing xorgproto-2020.1...
[head-amd64-default-job-04] | | `-- Extracting xorgproto-2020.1: .......... done
[head-amd64-default-job-04] | `-- Extracting libXdmcp-1.1.3: ......... done
[head-amd64-default-job-04] | `-- Installing libpthread-stubs-0.4...
[head-amd64-default-job-04] | `-- Extracting libpthread-stubs-0.4: .... done
[head-amd64-default-job-04] `-- Extracting libxcb-1.14_1: .......... done
[head-amd64-default-job-04] Extracting libX11-1.6.12,1: .......... done
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found
===> Installing existing package /packages/All/libXpm-3.5.13.txz
[head-amd64-default-job-04] Installing libXpm-3.5.13...
[head-amd64-default-job-04] `-- Installing libXext-1.3.4,1...
[head-amd64-default-job-04] `-- Extracting libXext-1.3.4,1: .......... done
[head-amd64-default-job-04] `-- Installing libXt-1.2.0,1...
[head-amd64-default-job-04] | `-- Installing libICE-1.0.10,1...
[head-amd64-default-job-04] | `-- Extracting libICE-1.0.10,1: .......... done
[head-amd64-default-job-04] | `-- Installing libSM-1.2.3,1...
[head-amd64-default-job-04] | `-- Extracting libSM-1.2.3,1: .......... done
[head-amd64-default-job-04] `-- Extracting libXt-1.2.0,1: .......... done
[head-amd64-default-job-04] Extracting libXpm-3.5.13: .......... done
===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: lib-depends >============================
===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libpcre.so - not found
===> Installing existing package /packages/All/pcre-8.44.txz
[head-amd64-default-job-04] Installing pcre-8.44...
[head-amd64-default-job-04] Extracting pcre-8.44: .......... done
===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so)
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libmysqlclient.so.20 - not found
===> Installing existing package /packages/All/mysql57-client-5.7.31_1.txz
[head-amd64-default-job-04] Installing mysql57-client-5.7.31_1...
[head-amd64-default-job-04] `-- Installing curl-7.72.0...
[head-amd64-default-job-04] | `-- Installing ca_root_nss-3.57...
[head-amd64-default-job-04] | `-- Extracting ca_root_nss-3.57: ........ done
[head-amd64-default-job-04] | `-- Installing libnghttp2-1.41.0...
[head-amd64-default-job-04] | `-- Extracting libnghttp2-1.41.0: .......... done
[head-amd64-default-job-04] `-- Extracting curl-7.72.0: .......... done
[head-amd64-default-job-04] `-- Installing cyrus-sasl-2.1.27_1...
*** Added group `cyrus' (id 60)
*** Added user `cyrus' (id 60)
[head-amd64-default-job-04] `-- Extracting cyrus-sasl-2.1.27_1: .......... done
[head-amd64-default-job-04] `-- Installing groff-1.22.4_3...
[head-amd64-default-job-04] | `-- Installing psutils-1.17_5...
[head-amd64-default-job-04] | | `-- Installing libpaper-1.1.24.4...
[head-amd64-default-job-04] | | `-- Extracting libpaper-1.1.24.4: .......... done
[head-amd64-default-job-04] | `-- Extracting psutils-1.17_5: .......... done
[head-amd64-default-job-04] | `-- Installing uchardet-0.0.7...
[head-amd64-default-job-04] | `-- Extracting uchardet-0.0.7: .......... done
[head-amd64-default-job-04] `-- Extracting groff-1.22.4_3: .......... done
[head-amd64-default-job-04] `-- Installing libedit-3.1.20191231,1...
[head-amd64-default-job-04] `-- Extracting libedit-3.1.20191231,1: .......... done
[head-amd64-default-job-04] `-- Installing libevent-2.1.12...
[head-amd64-default-job-04] `-- Extracting libevent-2.1.12: .......... done
[head-amd64-default-job-04] `-- Installing liblz4-1.9.2_1,1...
[head-amd64-default-job-04] `-- Extracting liblz4-1.9.2_1,1: .......... done
[head-amd64-default-job-04] `-- Installing protobuf-3.13.0,1...
[head-amd64-default-job-04] `-- Extracting protobuf-3.13.0,1: .......... done
[head-amd64-default-job-04] Extracting mysql57-client-5.7.31_1: .......... done
=====
Message from ca_root_nss-3.57:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
=====
Message from cyrus-sasl-2.1.27_1:
--
You can use sasldb2 for authentication, to add users use:
saslpasswd2 -c username
If you want to enable SMTP AUTH with the system Sendmail, read
Sendmail.README
NOTE: This port has been compiled with a default pwcheck_method of
auxprop. If you want to authenticate your user by /etc/passwd,
PAM or LDAP, install ports/security/cyrus-sasl2-saslauthd and
set sasl_pwcheck_method to saslauthd after installing the
Cyrus-IMAPd 2.X port. You should also check the
/usr/local/lib/sasl2/*.conf files for the correct
pwcheck_method.
If you want to use GSSAPI mechanism, install
ports/security/cyrus-sasl2-gssapi.
If you want to use SRP mechanism, install
ports/security/cyrus-sasl2-srp.
If you want to use LDAP auxprop plugin, install
ports/security/cyrus-sasl2-ldapdb.
=====
Message from groff-1.22.4_3:
--
In order to be able to use the html driver, you need to install the following
packages:
- ghostscript
- netpbm
=====
Message from mysql57-client-5.7.31_1:
--
This is the mysql CLIENT without the server.
for complete server and client, please install databases/mysql57-server
===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libmysqlclient.so.20 - found (/usr/local/lib/mysql/libmysqlclient.so.20)
===> Returning to build of ncbi-cxx-toolkit-21.0.0_2
===========================================================================
=======================<phase: configure >============================
===> Configuring for ncbi-cxx-toolkit-21.0.0_2
configure: loading site script /usr/ports/Templates/config.site
configure: creating cache config.cache
checking TeamCity build number... none
checking Subversion revision... unknown
checking NCBI stable components' version... unknown
checking build system type... amd64-portbld-freebsd13.0
checking host system type... amd64-portbld-freebsd13.0
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cpp
checking for gcc... no
checking for cc... cc
checking whether we are using the GNU C compiler... (cached) yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cc -E
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
configure: error: Do not know how to parse GCC version number 11.0.0
===> Script "configure" failed unexpectedly.
Please report the problem to yuri at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit
More information about the freebsd-pkg-fallout
mailing list