[package - head-amd64-default][science/gabedit] Failed for gabedit-2.5.1_4 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sun Sep 13 13:41:50 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: head/science/gabedit/Makefile 528082 2020-03-08 21:56:36Z jbeich $
Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p548441_s365678/logs/gabedit-2.5.1_4.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p548441_s365678
Log:
=>> Building science/gabedit
build started at Sun Sep 13 13:39:16 UTC 2020
port directory: /usr/ports/science/gabedit
package name: gabedit-2.5.1_4
building for: FreeBSD head-amd64-default-job-11 13.0-CURRENT FreeBSD 13.0-CURRENT 1300114 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/gabedit/Makefile 528082 2020-03-08 21:56:36Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300100
Jail OSVERSION: 1300114
Job Id: 11
!!! Jail is newer than host. (Jail: 1300114, Host: 1300100) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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===> The following configuration options are available for gabedit-2.5.1_4:
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===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.4.txz
[head-amd64-default-job-11] Installing pkg-1.15.4...
[head-amd64-default-job-11] Extracting pkg-1.15.4: .......... done
===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of gabedit-2.5.1_4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by gabedit-2.5.1_4 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by gabedit-2.5.1_4 for building
=> SHA256 Checksum OK for GabeditSrc251_061218.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by gabedit-2.5.1_4 for building
===> Extracting for gabedit-2.5.1_4
=> SHA256 Checksum OK for GabeditSrc251_061218.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for gabedit-2.5.1_4
===========================================================================
=======================<phase: build-depends >============================
===> gabedit-2.5.1_4 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[head-amd64-default-job-11] Installing gmake-4.3_2...
[head-amd64-default-job-11] `-- Installing gettext-runtime-0.21...
[head-amd64-default-job-11] | `-- Installing indexinfo-0.3.1...
[head-amd64-default-job-11] | `-- Extracting indexinfo-0.3.1: .... done
[head-amd64-default-job-11] `-- Extracting gettext-runtime-0.21: .......... done
[head-amd64-default-job-11] Extracting gmake-4.3_2: .......... done
<snip>
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditGaussianInput.c -o GabeditGaussianInput.o
SemiEmpiricalDlg.c:1312:13: warning: unused function 'runGeneric' [-Wunused-function]
static void runGeneric(MoleculeSE* mol, char* fileName, char* keys, char* genericCommand)
^
make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/VibrationalCorrections'
make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/IsotopeDistribution'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculator.c -o IsotopeDistributionCalculator.o
1 warning generated.
make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/SemiEmpirical'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculatorDlg.c -o IsotopeDistributionCalculatorDlg.o
make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/QFF'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gabedit2MRQFF.c -o Gabedit2MRQFF.o
make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/IsotopeDistribution'
make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/Crystallography'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Crystallo.c -o Crystallo.o
Crystallo.c:51:13: warning: unused function 'transposeMatrix3D' [-Wunused-function]
static void transposeMatrix3D(gdouble mat[][3])
^
make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/QFF'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsCIF.c -o UtilsCIF.o
UtilsCIF.c:198:13: warning: unused function 'print_block' [-Wunused-function]
static void print_block(GList* list)
^
1 warning generated.
make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/gl2ps'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include gl2ps.c -o gl2ps.o
gl2ps.c:4171:17: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551614 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]
double dmax = ~1UL;
~~~~ ^~~~
gl2ps.c:4215:17: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551614 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]
double dmax = ~1UL;
~~~~ ^~~~
gl2ps.c:4241:17: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551614 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]
double dmax = ~1UL;
~~~~ ^~~~
1 warning generated.
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditSPG.c -o GabeditSPG.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditKPoints.c -o GabeditKPoints.o
make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/src/Crystallography'
make[2]: Entering directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/spglib'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include arithmetic.c -o arithmetic.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include cell.c -o cell.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include debug.c -o debug.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include delaunay.c -o delaunay.o
3 warnings generated.
make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/gl2ps'
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include determination.c -o determination.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include hall_symbol.c -o hall_symbol.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kgrid.c -o kgrid.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kpoint.c -o kpoint.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include mathfunc.c -o mathfunc.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include niggli.c -o niggli.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include overlap.c -o overlap.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include pointgroup.c -o pointgroup.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include primitive.c -o primitive.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include refinement.c -o refinement.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include sitesym_database.c -o sitesym_database.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include site_symmetry.c -o site_symmetry.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spacegroup.c -o spacegroup.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spg_database.c -o spg_database.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib.c -o spglib.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib_f.c -o spglib_f.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spin.c -o spin.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include symmetry.c -o symmetry.o
cc -c -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include tetrahedron_method.c -o tetrahedron_method.o
make[2]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218/spglib'
mkdir -p tmp
cp src/Common/*.o src/Spectrum/*.o src/Files/*.o src/DeMon/*.o src/Gamess/*.o src/Gaussian/*.o src/Geometry/*.o src/MolecularMechanics/*.o src/Molcas/*.o src/Molpro/*.o src/Mopac/*.o src/MPQC/*.o src/MultiGrid/*.o src/NetWork/*.o src/Display/*.o src/FireFly/*.o src/NWChem/*.o src/Psicode/*.o src/Orca/*.o src/QChem/*.o src/SemiEmpirical/*.o src/Utils/*.o src/Symmetry/*.o src/VibrationalCorrections/*.o src/QFF/*.o src/IsotopeDistribution/*.o src/Crystallography/*.o gl2ps/*.o spglib/*.o tmp
cc -fstack-protector-strong tmp/*.o -o gabedit -lX11 `pkg-config gtk+-2.0 --libs` -lpangox-1.0 `pkg-config gtkglext-1.0 --libs` -L/usr/local/lib -lGL -L/usr/lib -lGLU -lpthread -L/usr/local/lib -lgomp -g -lm
ld: error: duplicate symbol: AOAvailable
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(AOAvailable)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x204)
ld: error: duplicate symbol: AOrb
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(AOrb)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x118)
ld: error: duplicate symbol: CancelCalcul
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(CancelCalcul)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x21C)
ld: error: duplicate symbol: CoefAlphaOrbitals
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(CoefAlphaOrbitals)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x168)
ld: error: duplicate symbol: CoefBetaOrbitals
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(CoefBetaOrbitals)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x188)
ld: error: duplicate symbol: DeleteContours
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(DeleteContours)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x218)
ld: error: duplicate symbol: EnerAlphaOrbitals
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(EnerAlphaOrbitals)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x178)
ld: error: duplicate symbol: EnerBetaOrbitals
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(EnerBetaOrbitals)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x190)
ld: error: duplicate symbol: FontStyle
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(FontStyle)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0xE8)
ld: error: duplicate symbol: GLArea
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(GLArea)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0xD0)
ld: error: duplicate symbol: GeomOrb
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(GeomOrb)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0xD8)
ld: error: duplicate symbol: NAOrb
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NAOrb)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x138)
ld: error: duplicate symbol: NAlphaOcc
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NAlphaOcc)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x14C)
ld: error: duplicate symbol: NAlphaOrb
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NAlphaOrb)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x140)
ld: error: duplicate symbol: NBetaOcc
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NBetaOcc)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x150)
ld: error: duplicate symbol: NBetaOrb
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NBetaOrb)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x144)
ld: error: duplicate symbol: NOrb
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NOrb)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x13C)
ld: error: duplicate symbol: NTotOcc
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NTotOcc)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x148)
ld: error: duplicate symbol: Ntype
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(Ntype)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x134)
ld: error: duplicate symbol: NumPoints
>>> defined at AnimationContours.c
>>> tmp/AnimationContours.o:(NumPoints)
>>> defined at AnimationGeomConv.c
>>> tmp/AnimationGeomConv.o:(.bss+0x40)
ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors)
cc: error: linker command failed with exit code 1 (use -v to see invocation)
gmake[1]: *** [Makefile:79: gabedit] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/gabedit/work/GabeditSrc251_061218'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/gabedit
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