[package - head-armv6-default][science/cdo] Failed for cdo-1.9.8_1 in lib-depends
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Jun 11 11:53:59 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident: $FreeBSD: head/science/cdo/Makefile 535392 2020-05-16 10:51:44Z sunpoet $
Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p538447_s362038/logs/cdo-1.9.8_1.log
Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p538447_s362038
Log:
=>> Building science/cdo
build started at Thu Jun 11 11:53:33 UTC 2020
port directory: /usr/ports/science/cdo
package name: cdo-1.9.8_1
building for: FreeBSD head-armv6-default-job-02 13.0-CURRENT FreeBSD 13.0-CURRENT 1300097 arm
maintained by: sunpoet at FreeBSD.org
Makefile ident: $FreeBSD: head/science/cdo/Makefile 535392 2020-05-16 10:51:44Z sunpoet $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300089
Jail OSVERSION: 1300097
Job Id: 02
!!! Jail is newer than host. (Jail: 1300097, Host: 1300089) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1300097
UNAME_v=FreeBSD 13.0-CURRENT 1300097
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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POUDRIERE_BUILD_TYPE=bulk
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PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
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PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for cdo-1.9.8_1:
CGRIBEX=on: Use CGRIBEX library for GRIB1 files
ECCODES=on: Use ecCodes for GRIB files
HDF5=on: HDF-5 data format support
JASPER=on: JPEG 2000 support via JasPer
NETCDF=on: NetCDF data format support
PROJ=on: PROJ.4 cartographic projections support
SZIP=on: Szip compression support
UDUNITS=on: Unidata units library (udunits) support
UUID=on: UUID support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
sunpoet at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--disable-data --disable-extra --disable-fortran --disable-ieg --disable-openmp --disable-service --enable-cdi-lib --program-transform-name="" --with-zlib=/usr --with-cgribex --with-eccodes --with-hdf5 --with-jasper --with-netcdf --with-proj --with-szlib --with-udunits2 --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install
-m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CGRIBEX="" NO_CGRIBEX="@comment " ECCODES="" NO_ECCODES="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cdo" EXAMPLESDIR="share/examples/cdo" DATADIR="share/cdo" WWWDIR="www/cdo" ETCDIR="etc/cdo"
--End PLIST_SUB--
--SUB_LIST--
CGRIBEX="" NO_CGRIBEX="@comment " ECCODES="" NO_ECCODES="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cdo DOCSDIR=/usr/local/share/doc/cdo EXAMPLESDIR=/usr/local/share/examples/cdo WWWDIR=/usr/local/www/cdo ETCDIR=/usr/local/etc/cdo
--End SUB_LIST--
---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 10.0.1 (git at github.com:llvm/llvm-project.git llvmorg-10.0.1-rc1-0-gf79cd71e145) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 10.0.1 (git at github.com:llvm/llvm-project.git llvmorg-10.0.1-rc1-0-gf79cd71e145) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
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CC_OUTPUT_9d218390_bfa62e83=yes
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CC_OUTPUT_9d218390_65ad290d=yes
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CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
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_OBJC_CCVERSION_9d218390=FreeBSD clang version 10.0.1 (git at github.com:llvm/llvm-project.git llvmorg-10.0.1-rc1-0-gf79cd71e145) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
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OPSYS=FreeBSD
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OSREL=13.0
OSVERSION=1300097
PYTHONBASE=/usr/local
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HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
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CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cdo-1.9.8_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.14.4.txz
[head-armv6-default-job-02] Installing pkg-1.14.4...
[head-armv6-default-job-02] Extracting pkg-1.14.4: .......... done
===> cdo-1.9.8_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cdo-1.9.8_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.8_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.8_1 for building
=> SHA256 Checksum OK for cdo-1.9.8.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.8_1 for building
===> Extracting for cdo-1.9.8_1
=> SHA256 Checksum OK for cdo-1.9.8.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for cdo-1.9.8_1
===> Applying FreeBSD patches for cdo-1.9.8_1 from /usr/ports/science/cdo/files
===========================================================================
=======================<phase: build-depends >============================
===> cdo-1.9.8_1 depends on package: gmake>=4.3 - not found
===> Installing existing package /packages/All/gmake-4.3_2.txz
[head-armv6-default-job-02] Installing gmake-4.3_2...
[head-armv6-default-job-02] `-- Installing gettext-runtime-0.20.2...
[head-armv6-default-job-02] | `-- Installing indexinfo-0.3.1...
[head-armv6-default-job-02] | `-- Extracting indexinfo-0.3.1: .... done
[head-armv6-default-job-02] `-- Extracting gettext-runtime-0.20.2: .......... done
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
[head-armv6-default-job-02] Extracting gmake-4.3_2: .......... done
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
Abort trap
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
Abort trap
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
===> cdo-1.9.8_1 depends on package: gmake>=4.3 - found
===> Returning to build of cdo-1.9.8_1
===========================================================================
=======================<phase: lib-depends >============================
===> cdo-1.9.8_1 depends on shared library: libcgribex.so - not found
===> Installing existing package /packages/All/cgribex-1.9.4.txz
[head-armv6-default-job-02] Installing cgribex-1.9.4...
[head-armv6-default-job-02] `-- Installing hdf-szip-2.1.1...
[head-armv6-default-job-02] `-- Extracting hdf-szip-2.1.1: .......... done
[head-armv6-default-job-02] `-- Installing jasper-2.0.16_1...
[head-armv6-default-job-02] | `-- Installing freeglut-3.0.0_2...
[head-armv6-default-job-02] | | `-- Installing libGLU-9.0.1...
[head-armv6-default-job-02] | | `-- Installing mesa-libs-19.0.8_1...
[head-armv6-default-job-02] | | | `-- Installing expat-2.2.8...
[head-armv6-default-job-02] | | | `-- Extracting expat-2.2.8: .......... done
[head-armv6-default-job-02] | | | `-- Installing libX11-1.6.9_1,1...
[head-armv6-default-job-02] | | | `-- Installing libXau-1.0.9...
[head-armv6-default-job-02] | | | `-- Extracting libXau-1.0.9: .......... done
[head-armv6-default-job-02] | | | `-- Installing libXdmcp-1.1.3...
[head-armv6-default-job-02] | | | | `-- Installing xorgproto-2020.1...
[head-armv6-default-job-02] | | | | `-- Extracting xorgproto-2020.1: .......... done
[head-armv6-default-job-02] | | | `-- Extracting libXdmcp-1.1.3: ......... done
[head-armv6-default-job-02] | | | `-- Installing libxcb-1.13.1...
[head-armv6-default-job-02] | | | | `-- Installing libpthread-stubs-0.4...
[head-armv6-default-job-02] | | | | `-- Extracting libpthread-stubs-0.4: .... done
[head-armv6-default-job-02] | | | | `-- Installing libxml2-2.9.10...
[head-armv6-default-job-02] | | | | `-- Extracting libxml2-2.9.10: .......... done
[head-armv6-default-job-02] | | | `-- Extracting libxcb-1.13.1: .......... done
[head-armv6-default-job-02] | | | `-- Extracting libX11-1.6.9_1,1: .......... done
[head-armv6-default-job-02] | | | `-- Installing libXdamage-1.1.5...
[head-armv6-default-job-02] | | | `-- Installing libXfixes-5.0.3_2...
[head-armv6-default-job-02] | | | `-- Extracting libXfixes-5.0.3_2: .......... done
[head-armv6-default-job-02] | | | `-- Extracting libXdamage-1.1.5: ......... done
[head-armv6-default-job-02] | | | `-- Installing libXext-1.3.4,1...
[head-armv6-default-job-02] | | | `-- Extracting libXext-1.3.4,1: .......... done
[head-armv6-default-job-02] | | | `-- Installing libXrandr-1.5.2...
[head-armv6-default-job-02] | | | `-- Installing libXrender-0.9.10_2...
[head-armv6-default-job-02] | | | `-- Extracting libXrender-0.9.10_2: .......... done
[head-armv6-default-job-02] | | | `-- Extracting libXrandr-1.5.2: .......... done
[head-armv6-default-job-02] | | | `-- Installing libXxf86vm-1.1.4_3...
[head-armv6-default-job-02] | | | `-- Extracting libXxf86vm-1.1.4_3: .......... done
[head-armv6-default-job-02] | | | `-- Installing libdrm-2.4.102,1...
[head-armv6-default-job-02] | | | `-- Installing libpciaccess-0.16...
[head-armv6-default-job-02] | | | | `-- Installing pciids-20200529...
[head-armv6-default-job-02] | | | | `-- Extracting pciids-20200529: ..... done
[head-armv6-default-job-02] | | | `-- Extracting libpciaccess-0.16: ......... done
[head-armv6-default-job-02] | | | `-- Extracting libdrm-2.4.102,1: .......... done
[head-armv6-default-job-02] | | | `-- Installing libxshmfence-1.3...
[head-armv6-default-job-02] | | | `-- Extracting libxshmfence-1.3: ......... done
[head-armv6-default-job-02] | | | `-- Installing wayland-1.18.0_3...
[head-armv6-default-job-02] | | | `-- Installing libepoll-shim-0.0.20200602...
[head-armv6-default-job-02] | | | `-- Extracting libepoll-shim-0.0.20200602: .......... done
[head-armv6-default-job-02] | | | `-- Installing libffi-3.2.1_3...
[head-armv6-default-job-02] | | | `-- Extracting libffi-3.2.1_3: .......... done
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
[head-armv6-default-job-02] | | | `-- Extracting wayland-1.18.0_3: .......... done
[head-armv6-default-job-02] | | `-- Extracting mesa-libs-19.0.8_1: .......... done
[head-armv6-default-job-02] | | `-- Extracting libGLU-9.0.1: ...... done
[head-armv6-default-job-02] | | `-- Installing libICE-1.0.10,1...
[head-armv6-default-job-02] | | `-- Extracting libICE-1.0.10,1: .......... done
[head-armv6-default-job-02] | | `-- Installing libXi-1.7.10,1...
[head-armv6-default-job-02] | | `-- Extracting libXi-1.7.10,1: .......... done
[head-armv6-default-job-02] | `-- Extracting freeglut-3.0.0_2: .......... done
[head-armv6-default-job-02] | `-- Installing jpeg-turbo-2.0.4...
[head-armv6-default-job-02] | `-- Extracting jpeg-turbo-2.0.4: .......... done
[head-armv6-default-job-02] | `-- Installing libXmu-1.1.3,1...
[head-armv6-default-job-02] | | `-- Installing libXt-1.2.0,1...
[head-armv6-default-job-02] | | `-- Installing libSM-1.2.3,1...
[head-armv6-default-job-02] | | `-- Extracting libSM-1.2.3,1: .......... done
[head-armv6-default-job-02] | | `-- Extracting libXt-1.2.0,1: .......... done
[head-armv6-default-job-02] | `-- Extracting libXmu-1.1.3,1: .......... done
[head-armv6-default-job-02] `-- Extracting jasper-2.0.16_1: .......... done
[head-armv6-default-job-02] Extracting cgribex-1.9.4: .......... done
=====
Message from freeglut-3.0.0_2:
--
Joystick support is untested and it is unknown if it works.
Do not hesitate to contact x11 at FreeBSD.org if this causes issues.
===> cdo-1.9.8_1 depends on shared library: libcgribex.so - found (/usr/local/lib/libcgribex.so)
===> Returning to build of cdo-1.9.8_1
===> cdo-1.9.8_1 depends on shared library: libeccodes.so - not found
===> Installing existing package /packages/All/eccodes-2.17.0.txz
Child process pid=82552 terminated abnormally: Segmentation fault
*** Error code 139
Stop.
make: stopped in /usr/ports/science/cdo
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