[package - 113arm64-quarterly][science/qmcpack] Failed for qmcpack-3.8.0_5 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sun May 31 23:20:14 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: branches/2020Q2/science/qmcpack/Makefile 528082 2020-03-08 21:56:36Z jbeich $
Log URL: http://thunderx1.nyi.freebsd.org/data/113arm64-quarterly/537109/logs/qmcpack-3.8.0_5.log
Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=113arm64-quarterly&build=537109
Log:
=>> Building science/qmcpack
build started at Sun May 31 23:19:01 UTC 2020
port directory: /usr/ports/science/qmcpack
package name: qmcpack-3.8.0_5
building for: FreeBSD 113arm64-quarterly-job-16 11.3-RELEASE-p9 FreeBSD 11.3-RELEASE-p9 1103000 arm64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2020Q2/science/qmcpack/Makefile 528082 2020-03-08 21:56:36Z jbeich $
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> qmcpack-3.8.0_5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.13.2.txz
[113arm64-quarterly-job-16] Installing pkg-1.13.2...
[113arm64-quarterly-job-16] Extracting pkg-1.13.2: .......... done
===> qmcpack-3.8.0_5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of qmcpack-3.8.0_5
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.8.0_5 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.8.0_5 for building
=> SHA256 Checksum OK for QMCPACK-qmcpack-v3.8.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by qmcpack-3.8.0_5 for building
===> Extracting for qmcpack-3.8.0_5
=> SHA256 Checksum OK for QMCPACK-qmcpack-v3.8.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for qmcpack-3.8.0_5
===> Applying FreeBSD patches for qmcpack-3.8.0_5
===========================================================================
=======================<phase: build-depends >============================
===> qmcpack-3.8.0_5 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.16.5.txz
[113arm64-quarterly-job-16] Installing cmake-3.16.5...
[113arm64-quarterly-job-16] `-- Installing curl-7.69.1...
[113arm64-quarterly-job-16] | `-- Installing ca_root_nss-3.53...
[113arm64-quarterly-job-16] | `-- Extracting ca_root_nss-3.53: ........ done
[113arm64-quarterly-job-16] | `-- Installing libnghttp2-1.40.0...
[113arm64-quarterly-job-16] | `-- Extracting libnghttp2-1.40.0: .......... done
[113arm64-quarterly-job-16] `-- Extracting curl-7.69.1: .......... done
[113arm64-quarterly-job-16] `-- Installing expat-2.2.8...
[113arm64-quarterly-job-16] `-- Extracting expat-2.2.8: .......... done
[113arm64-quarterly-job-16] `-- Installing jsoncpp-1.9.2...
[113arm64-quarterly-job-16] `-- Extracting jsoncpp-1.9.2: .......... done
[113arm64-quarterly-job-16] `-- Installing libarchive-3.4.2,1...
[113arm64-quarterly-job-16] | `-- Installing liblz4-1.9.2_1,1...
[113arm64-quarterly-job-16] | `-- Extracting liblz4-1.9.2_1,1: .......... done
[113arm64-quarterly-job-16] | `-- Installing lzo2-2.10_1...
[113arm64-quarterly-job-16] | `-- Extracting lzo2-2.10_1: .......... done
[113arm64-quarterly-job-16] `-- Extracting libarchive-3.4.2,1: .......... done
[113arm64-quarterly-job-16] `-- Installing libuv-1.35.0...
[113arm64-quarterly-job-16] `-- Extracting libuv-1.35.0: .......... done
<snip>
===> qmcpack-3.8.0_5 depends on shared library: libboost_system.so - not found
===> Installing existing package /packages/All/boost-libs-1.72.0_1.txz
[113arm64-quarterly-job-16] Installing boost-libs-1.72.0_1...
[113arm64-quarterly-job-16] `-- Installing icu-66.1,1...
[113arm64-quarterly-job-16] `-- Extracting icu-66.1,1: .......... done
[113arm64-quarterly-job-16] Extracting boost-libs-1.72.0_1: .......... done
=====
Message from boost-libs-1.72.0_1:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> qmcpack-3.8.0_5 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so)
===> Returning to build of qmcpack-3.8.0_5
===> qmcpack-3.8.0_5 depends on shared library: libfftw3.so - not found
===> Installing existing package /packages/All/fftw3-3.3.8_5.txz
[113arm64-quarterly-job-16] Installing fftw3-3.3.8_5...
[113arm64-quarterly-job-16] Extracting fftw3-3.3.8_5: .......... done
===> qmcpack-3.8.0_5 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===> Returning to build of qmcpack-3.8.0_5
===> qmcpack-3.8.0_5 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.10.6,1.txz
[113arm64-quarterly-job-16] Installing hdf5-1.10.6,1...
[113arm64-quarterly-job-16] `-- Installing hdf-szip-2.1.1...
[113arm64-quarterly-job-16] `-- Extracting hdf-szip-2.1.1: .......... done
[113arm64-quarterly-job-16] Extracting hdf5-1.10.6,1: .......... done
===> qmcpack-3.8.0_5 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of qmcpack-3.8.0_5
===> qmcpack-3.8.0_5 depends on shared library: libmpich.so - not found
===> Installing existing package /packages/All/mpich-3.2.1_6.txz
[113arm64-quarterly-job-16] Installing mpich-3.2.1_6...
[113arm64-quarterly-job-16] `-- Installing hwloc-1.11.11...
[113arm64-quarterly-job-16] | `-- Installing libpciaccess-0.16...
[113arm64-quarterly-job-16] | | `-- Installing pciids-20200324...
[113arm64-quarterly-job-16] | | `-- Extracting pciids-20200324: ..... done
[113arm64-quarterly-job-16] | `-- Extracting libpciaccess-0.16: ......... done
[113arm64-quarterly-job-16] | `-- Installing libxml2-2.9.10...
[113arm64-quarterly-job-16] | `-- Extracting libxml2-2.9.10: .......... done
[113arm64-quarterly-job-16] `-- Extracting hwloc-1.11.11: .......... done
[113arm64-quarterly-job-16] `-- Installing perl5-5.30.2...
[113arm64-quarterly-job-16] `-- Extracting perl5-5.30.2: .......... done
[113arm64-quarterly-job-16] Extracting mpich-3.2.1_6: .......... done
=====
Message from perl5-5.30.2:
--
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
=====
Message from mpich-3.2.1_6:
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> qmcpack-3.8.0_5 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===> Returning to build of qmcpack-3.8.0_5
===> qmcpack-3.8.0_5 depends on shared library: libopenblas.so - not found
===> Installing existing package /packages/All/openblas-0.3.7_2,1.txz
[113arm64-quarterly-job-16] Installing openblas-0.3.7_2,1...
[113arm64-quarterly-job-16] Extracting openblas-0.3.7_2,1: .......... done
===> qmcpack-3.8.0_5 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> Returning to build of qmcpack-3.8.0_5
===> qmcpack-3.8.0_5 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===> qmcpack-3.8.0_5 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for qmcpack-3.8.0_5
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/qmcpack/work/.build
-- The C compiler identification is Clang 8.0.0
-- The CXX compiler identification is Clang 8.0.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- QMC_SYMLINK_TEST_FILES = TRUE. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source. For example, Titan at OLCF.
-- CMAKE_BUILD_TYPE is RELEASE
-- defining the float point precision
Base precision = double
Full precision = double
-- Looking for sincos
-- Looking for sincos - not found
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Performing Test HAVE_ISZERO
-- Performing Test HAVE_ISZERO - Failed
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Looking for memory.h
-- Looking for memory.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Trying to figure out .....
-- Compiler: Clang
-- libstdc++/C++ compiler version compatibility check failed
CMake Error at CMake/Testlibstdc++.cmake:37 (message):
Change Dir:
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/make cmTC_0704d/fast && /usr/bin/make -f
CMakeFiles/cmTC_0704d.dir/build.make CMakeFiles/cmTC_0704d.dir/build
Building CXX object CMakeFiles/cmTC_0704d.dir/try_libstdcxx.cpp.o
/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include
-fno-strict-aliasing -isystem /usr/local/include -fopenmp
-fomit-frame-pointer -fstrict-aliasing -D__forceinline=inline
-Wno-deprecated -Wno-unused-value -Wno-undefined-var-template -mcpu=native
-std=c++14 -o CMakeFiles/cmTC_0704d.dir/try_libstdcxx.cpp.o -c
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp/try_libstdcxx.cpp
Linking CXX executable cmTC_0704d
/usr/local/bin/cmake -E cmake_link_script
CMakeFiles/cmTC_0704d.dir/link.txt --verbose=1
/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include
-fno-strict-aliasing -isystem /usr/local/include -fopenmp
-fomit-frame-pointer -fstrict-aliasing -D__forceinline=inline
-Wno-deprecated -Wno-unused-value -Wno-undefined-var-template -mcpu=native
-Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin
-fstack-protector-strong -L/usr/local/lib
CMakeFiles/cmTC_0704d.dir/try_libstdcxx.cpp.o -o cmTC_0704d
/usr/local/bin/ld: cannot find -lomp
c++: error: linker command failed with exit code 1 (use -v to see
invocation)
*** Error code 1
Stop.
make[2]: stopped in
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
*** Error code 1
Stop.
make[1]: stopped in
/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp
Call Stack (most recent call first):
CMakeLists.txt:420 (include)
-- Configuring incomplete, errors occurred!
See also "/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeOutput.log".
See also "/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1
Stop.
make: stopped in /usr/ports/science/qmcpack
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