[package - head-i386-default][science/octopus] Failed for octopus-9.2_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue May 12 18:39:27 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: dinoex at FreeBSD.org
Ident: $FreeBSD: head/science/octopus/Makefile 533989 2020-05-04 21:31:39Z dinoex $
Log URL: http://beefy17.nyi.freebsd.org/data/head-i386-default/p534969_s360946/logs/octopus-9.2_1.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p534969_s360946
Log:
=>> Building science/octopus
build started at Tue May 12 18:36:27 UTC 2020
port directory: /usr/ports/science/octopus
package name: octopus-9.2_1
building for: FreeBSD head-i386-default-job-14 13.0-CURRENT FreeBSD 13.0-CURRENT 1300094 i386
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/octopus/Makefile 533989 2020-05-04 21:31:39Z dinoex $
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!!! Jail is newer than host. (Jail: 1300094, Host: 1300089) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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yuri at FreeBSD.org
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> octopus-9.2_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.14.4.txz
[head-i386-default-job-14] Installing pkg-1.14.4...
[head-i386-default-job-14] Extracting pkg-1.14.4: .......... done
ldconfig: aout support is deprecated
===> octopus-9.2_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of octopus-9.2_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by octopus-9.2_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by octopus-9.2_1 for building
=> SHA256 Checksum OK for octopus-9.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by octopus-9.2_1 for building
===> Extracting for octopus-9.2_1
=> SHA256 Checksum OK for octopus-9.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for octopus-9.2_1
===> Applying FreeBSD patches for octopus-9.2_1
===> Cleanly applied FreeBSD patch(es) patch-configure patch-external__libs_Makefile.in patch-src_basic_varinfo__low.c
===========================================================================
=======================<phase: build-depends >============================
===> octopus-9.2_1 depends on executable: bash - not found
<snip>
2547 | do 4120,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 4120 at (1)
math/sgfft.F90:2604:40:
2604 | do 8120,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 8120 at (1)
math/sgfft.F90:2717:40:
2717 | do 8020,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 8020 at (1)
math/sgfft.F90:2825:40:
2825 | do 8121,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 8121 at (1)
math/sgfft.F90:2939:40:
2939 | do 8021,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 8021 at (1)
math/sgfft.F90:3039:24:
3039 | do 3001,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 3001 at (1)
math/sgfft.F90:3072:32:
3072 | do 3010,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 3010 at (1)
math/sgfft.F90:3102:32:
3102 | do 3020,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 3020 at (1)
math/sgfft.F90:3134:32:
3134 | do 3030,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 3030 at (1)
math/sgfft.F90:3166:32:
3166 | do 3040,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 3040 at (1)
math/sgfft.F90:3206:24:
3206 | do 3090,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 3090 at (1)
math/sgfft.F90:3255:24:
3255 | do 5001,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 5001 at (1)
math/sgfft.F90:3310:40:
3310 | do 5010,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 5010 at (1)
math/sgfft.F90:3366:40:
3366 | do 5020,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 5020 at (1)
math/sgfft.F90:3437:32:
3437 | do 5100,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 5100 at (1)
math/sgfft.F90:3505:24:
3505 | do 6120,j=1,nfft
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 6120 at (1)
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. hamiltonian/projector_matrix.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > hamiltonian/projector_matrix_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o hamiltonian/projector_matrix.o hamiltonian/projector_matrix_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. basic/mpi_lib.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > basic/mpi_lib_oct.f90
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/sparskit.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > math/sparskit_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o basic/mpi_lib.o basic/mpi_lib_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o math/sparskit.o math/sparskit_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/compressed_sensing.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > math/compressed_sensing_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o math/compressed_sensing.o math/compressed_sensing_oct.f90
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/matrix.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > math/matrix_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o math/matrix.o math/matrix_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. ions/box.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > ions/box_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o ions/box.o ions/box_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/lalg_adv.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > math/lalg_adv_oct.f90
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/lalg_basic.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > math/lalg_basic_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o math/lalg_adv.o math/lalg_adv_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o math/lalg_basic.o math/lalg_basic_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. grid/index.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > grid/index_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o grid/index.o grid/index_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. basic/lookup.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > basic/lookup_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o basic/lookup.o basic/lookup_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. species/atomic.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > species/atomic_oct.f90
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o species/atomic.o species/atomic_oct.f90
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/spline_filter.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > math/spline_filter_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o math/spline_filter.o math/spline_filter_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
species/atomic.F90:299:26:
299 | type(XC_F90(pointer_t)) :: x_conf, c_conf
| 1
Error: Derived type 'xc_f90_pointer_t' at (1) is being used before it is defined
species/atomic.F90:300:26:
300 | type(XC_F90(pointer_t)) :: x_info, c_info
| 1
Error: Derived type 'xc_f90_pointer_t' at (1) is being used before it is defined
cpp -x c -ansi -isystem /usr/local/include -I../src/include -I../src/include -I../external_libs/spglib-1.9.9/src -I../liboct_parser -I/usr/local/include -I/usr/local/include -I/usr/include -DSHARE_DIR='"/usr/local/share/octopus"' -I. math/math.F90 | \
../build/preprocess.pl - \
"" "yes" "yes" > math/math_oct.f90
species/atomic.F90:322:34:
322 | call XC_F90(func_init)(c_conf, c_info, XC_GGA_C_PBE, NSPIN)
| 1
Error: Symbol 'c_conf' at (1) has no IMPLICIT type
species/atomic.F90:322:42:
322 | call XC_F90(func_init)(c_conf, c_info, XC_GGA_C_PBE, NSPIN)
| 1
Error: Symbol 'c_info' at (1) has no IMPLICIT type
species/atomic.F90:321:34:
321 | call XC_F90(func_init)(x_conf, x_info, XC_GGA_X_PBE, NSPIN)
| 1
Error: Symbol 'x_conf' at (1) has no IMPLICIT type
species/atomic.F90:321:42:
321 | call XC_F90(func_init)(x_conf, x_info, XC_GGA_X_PBE, NSPIN)
| 1
Error: Symbol 'x_info' at (1) has no IMPLICIT type
gmake[3]: *** [Makefile:2659: species/atomic.o] Error 1
gmake[3]: *** Waiting for unfinished jobs....
gfortran9 -I/usr/local/include -ffree-line-length-none -Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I ../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include -I/usr/include -I /include -c -o math/math.o math/math_oct.f90
f951: Warning: Nonexistent include directory '../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/octopus/work/octopus-9.2/src'
gmake[2]: *** [Makefile:500: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/octopus/work/octopus-9.2'
gmake[1]: *** [Makefile:441: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/octopus/work/octopus-9.2'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/octopus
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