[package - 121amd64-default][biology/cytoscape] Failed for cytoscape-3.6.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Apr 9 22:02:51 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jkim at FreeBSD.org
Ident: $FreeBSD: head/biology/cytoscape/Makefile 518482 2019-11-26 21:46:12Z jkim $
Log URL: http://beefy6.nyi.freebsd.org/data/121amd64-default/531167/logs/cytoscape-3.6.1.log
Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=121amd64-default&build=531167
Log:
=>> Building biology/cytoscape
build started at Thu Apr 9 21:15:55 UTC 2020
port directory: /usr/ports/biology/cytoscape
package name: cytoscape-3.6.1
building for: FreeBSD 121amd64-default-job-16 12.1-RELEASE-p3 FreeBSD 12.1-RELEASE-p3 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/cytoscape/Makefile 518482 2019-11-26 21:46:12Z jkim $
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--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cytoscape" EXAMPLESDIR="share/examples/cytoscape" DATADIR="share/cytoscape" WWWDIR="www/cytoscape" ETCDIR="etc/cytoscape"
--End PLIST_SUB--
--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape
--End SUB_LIST--
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=======================<phase: check-sanity >============================
===> License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.14.2.txz
[121amd64-default-job-16] Installing pkg-1.14.2...
[121amd64-default-job-16] Extracting pkg-1.14.2: .......... done
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cytoscape-3.6.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===> Extracting for cytoscape-3.6.1
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for cytoscape-3.6.1
===========================================================================
=======================<phase: build-depends >============================
===> cytoscape-3.6.1 depends on executable: mvn - not found
===> Installing existing package /packages/All/maven-3.6.3.txz
[121amd64-default-job-16] Installing maven-3.6.3...
[121amd64-default-job-16] `-- Installing maven-wrapper-1_2...
[121amd64-default-job-16] `-- Extracting maven-wrapper-1_2: .. done
[121amd64-default-job-16] `-- Installing openjdk8-8.242.07.1_1...
<snip>
[INFO] Configured Artifact: org.cytoscape:cy-rest:3.7.0:jar
[INFO] Configured Artifact: org.cytoscape:opencl-cycl:3.5.0:jar
[INFO] Configured Artifact: org.cytoscape:opencl-layout:3.5.0:jar
[INFO] Configured Artifact: org.cytoscape:welcome:3.5.2:jar
[INFO] Configured Artifact: org.cytoscape.diffusion:diffusion:1.5.2:jar
[INFO] Configured Artifact: org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar
[INFO] Configured Artifact: edu.ucsf.rbvi:cyBrowser:1.0.0:jar
[INFO] Configured Artifact: org.cytoscape:cx-support:2.2.2:jar
[INFO] Configured Artifact: org.cytoscape:cy-ndex-2:2.2.2:jar
[INFO] org.cytoscape:core-apps-meta:3.6.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:biopax:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:command-dialog:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:json:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:idmapper:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:network-analyzer:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:network-merge:3.3.4:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:psi-mi:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:sbml:3.3.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:webservice-biomart-client:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:webservice-psicquic-client:3.4.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:cy-rest:3.7.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:opencl-cycl:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:opencl-layout:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:welcome:3.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape.diffusion:diffusion:1.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] edu.ucsf.rbvi:cyBrowser:1.0.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:cx-support:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:cy-ndex-2:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO]
[INFO] --- maven-assembly-plugin:2.5.5:single (directory) @ cytoscape ---
[INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-dev.xml
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[INFO] Copying files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape
[WARNING] Assembly file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-unix) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-windows) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-wrap-deployer-windows) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-disable-jmx) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] <<< karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo-dev) < compile @ cytoscape <<<
[INFO]
[INFO]
[INFO] --- karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo-dev) @ cytoscape ---
[INFO] Base repo: file:///wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/
[INFO] Copying artifact: org.cytoscape.distribution:features:xml:features:3.6.1
[INFO]
[INFO] --- maven-dependency-plugin:2.10:copy (copy-dependencies) @ cytoscape ---
[INFO] Configured Artifact: org.cytoscape.distribution:branding:3.6.1:jar
[INFO] Configured Artifact: org.cytoscape.distribution:karaf-launcher:3.6.1:jar
[INFO] org.cytoscape.distribution:branding:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/branding
[INFO] org.cytoscape.distribution:karaf-launcher:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/launcher
[INFO]
[INFO] --- maven-dependency-plugin:2.10:copy-dependencies (copy-dependencies) @ cytoscape ---
[INFO] org.apache.karaf:apache-karaf:tar.gz:3.0.3 already exists in destination.
[INFO] org.apache.karaf:apache-karaf:zip:3.0.3 already exists in destination.
[INFO] org.apache.karaf.features:standard:xml:features:3.0.3 already exists in destination.
[INFO]
[INFO] --- maven-dependency-plugin:2.10:unpack (unpack-dependencies) @ cytoscape ---
[INFO] Configured Artifact: org.apache.karaf:apache-karaf:?:tar.gz
[INFO] Configured Artifact: org.cytoscape.gui-distribution:splash-launcher:3.6.1:jar
[INFO] apache-karaf-3.0.3.tar.gz already unpacked.
[INFO] splash-launcher-3.6.1.jar already unpacked.
[INFO]
[INFO] --- maven-dependency-plugin:2.10:copy (copy) @ cytoscape ---
[INFO] Configured Artifact: org.cytoscape:core-apps-meta:3.6.0:jar
[INFO] Configured Artifact: org.cytoscape:biopax:3.3.2:jar
[INFO] Configured Artifact: org.cytoscape:command-dialog:3.6.1:jar
[INFO] Configured Artifact: org.cytoscape:json:3.6.1:jar
[INFO] Configured Artifact: org.cytoscape:idmapper:3.6.1:jar
[INFO] Configured Artifact: org.cytoscape:network-analyzer:3.3.2:jar
[INFO] Configured Artifact: org.cytoscape:network-merge:3.3.4:jar
[INFO] Configured Artifact: org.cytoscape:psi-mi:3.3.2:jar
[INFO] Configured Artifact: org.cytoscape:sbml:3.3.3:jar
[INFO] Configured Artifact: org.cytoscape:webservice-biomart-client:3.3.2:jar
[INFO] Configured Artifact: org.cytoscape:webservice-psicquic-client:3.4.0:jar
[INFO] Configured Artifact: org.cytoscape:cy-rest:3.7.0:jar
[INFO] Configured Artifact: org.cytoscape:opencl-cycl:3.5.0:jar
[INFO] Configured Artifact: org.cytoscape:opencl-layout:3.5.0:jar
[INFO] Configured Artifact: org.cytoscape:welcome:3.5.2:jar
[INFO] Configured Artifact: org.cytoscape.diffusion:diffusion:1.5.2:jar
[INFO] Configured Artifact: org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar
[INFO] Configured Artifact: edu.ucsf.rbvi:cyBrowser:1.0.0:jar
[INFO] Configured Artifact: org.cytoscape:cx-support:2.2.2:jar
[INFO] Configured Artifact: org.cytoscape:cy-ndex-2:2.2.2:jar
[INFO] org.cytoscape:core-apps-meta:3.6.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:biopax:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:command-dialog:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:json:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:idmapper:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:network-analyzer:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:network-merge:3.3.4:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:psi-mi:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:sbml:3.3.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:webservice-biomart-client:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:webservice-psicquic-client:3.4.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:cy-rest:3.7.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:opencl-cycl:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:opencl-layout:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:welcome:3.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape.diffusion:diffusion:1.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] edu.ucsf.rbvi:cyBrowser:1.0.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:cx-support:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO] org.cytoscape:cy-ndex-2:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps
[INFO]
[INFO] --- maven-assembly-plugin:2.5.5:single (directory) @ cytoscape ---
[INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-dev.xml
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[INFO] Copying files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape
[WARNING] Assembly file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-unix) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-windows) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-wrap-deployer-windows) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-disable-jmx) @ cytoscape ---
[INFO] Replacement run on 1 file.
[INFO]
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cytoscape >>>
[INFO]
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cytoscape <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cytoscape ---
[INFO]
[INFO] --- maven-assembly-plugin:2.5.5:single (unix-bin) @ cytoscape ---
[INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-unix.xml
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[INFO] Building tar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz
[INFO]
[INFO] --- maven-assembly-plugin:2.5.5:single (windows-bin) @ cytoscape ---
[INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-windows.xml
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[INFO] Building zip: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-windows-3.6.1.zip
*** Signal 9
Stop.
make: stopped in /usr/ports/biology/cytoscape
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