[package - 121armv7-quarterly][biology/ngs-sdk] Failed for ngs-sdk-2.10.4 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Apr 9 08:03:28 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: branches/2020Q2/biology/ngs-sdk/Makefile 527973 2020-03-07 19:58:39Z yuri $
Log URL: http://beefy13.nyi.freebsd.org/data/121armv7-quarterly/531165/logs/ngs-sdk-2.10.4.log
Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=121armv7-quarterly&build=531165
Log:
=>> Building biology/ngs-sdk
build started at Thu Apr 9 08:03:11 UTC 2020
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-2.10.4
building for: FreeBSD 121armv7-quarterly-job-14 12.1-RELEASE-p3 FreeBSD 12.1-RELEASE-p3 1201000 arm
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2020Q2/biology/ngs-sdk/Makefile 527973 2020-03-07 19:58:39Z yuri $
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yuri at FreeBSD.org
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=======================<phase: check-sanity >============================
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> ngs-sdk-2.10.4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.13.2.txz
[121armv7-quarterly-job-14] Installing pkg-1.13.2...
[121armv7-quarterly-job-14] Extracting pkg-1.13.2: .......... done
===> ngs-sdk-2.10.4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ngs-sdk-2.10.4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.10.4 for building
===========================================================================
=======================<phase: checksum >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.10.4 for building
=> SHA256 Checksum OK for ncbi-ngs-2.10.4_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.10.4 for building
===> Extracting for ngs-sdk-2.10.4
=> SHA256 Checksum OK for ncbi-ngs-2.10.4_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for ngs-sdk-2.10.4
===> Applying FreeBSD patches for ngs-sdk-2.10.4
===========================================================================
=======================<phase: build-depends >============================
===> ngs-sdk-2.10.4 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_3.txz
[121armv7-quarterly-job-14] Installing gmake-4.2.1_3...
[121armv7-quarterly-job-14] `-- Installing gettext-runtime-0.20.1...
[121armv7-quarterly-job-14] | `-- Installing indexinfo-0.3.1...
[121armv7-quarterly-job-14] | `-- Extracting indexinfo-0.3.1: .... done
[121armv7-quarterly-job-14] `-- Extracting gettext-runtime-0.20.1: .......... done
[121armv7-quarterly-job-14] Extracting gmake-4.2.1_3: .......... done
===> ngs-sdk-2.10.4 depends on executable: gmake - found
===> Returning to build of ngs-sdk-2.10.4
===> ngs-sdk-2.10.4 depends on package: perl5>=5.30.r1<5.31 - not found
===> Installing existing package /packages/All/perl5-5.30.2.txz
[121armv7-quarterly-job-14] Installing perl5-5.30.2...
[121armv7-quarterly-job-14] Extracting perl5-5.30.2: .......... done
=====
Message from perl5-5.30.2:
--
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===> ngs-sdk-2.10.4 depends on package: perl5>=5.30.r1<5.31 - found
===> Returning to build of ngs-sdk-2.10.4
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for ngs-sdk-2.10.4
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... FreeBSD
checking machine architecture... arm
configure: error: unsupported architecture 'FreeBSD'
===========================================================================
=======================<phase: build >============================
===> Building for ngs-sdk-2.10.4
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.10.4'
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.10.4/ngs-sdk'
*** File 'Makefile.config.FreeBSD.arm' is missing. Please run ./configure
gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.10.4/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.arm] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.10.4/ngs-sdk'
gmake[1]: *** [Makefile:52: ngs-sdk] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.10.4'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ngs-sdk
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