[package - 121arm64-quarterly][math/combblas] Failed for CombBLAS-1.6.2_5 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Apr 9 03:50:55 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: branches/2020Q2/math/combblas/Makefile 528082 2020-03-08 21:56:36Z jbeich $
Log URL: http://thunderx1.nyi.freebsd.org/data/121arm64-quarterly/530537/logs/CombBLAS-1.6.2_5.log
Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=121arm64-quarterly&build=530537
Log:
=>> Building math/combblas
build started at Thu Apr 9 03:49:22 UTC 2020
port directory: /usr/ports/math/combblas
package name: CombBLAS-1.6.2_5
building for: FreeBSD 121arm64-quarterly-job-14 12.1-RELEASE-p3 FreeBSD 12.1-RELEASE-p3 1201000 arm64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: branches/2020Q2/math/combblas/Makefile 528082 2020-03-08 21:56:36Z jbeich $
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> CombBLAS-1.6.2_5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.13.2.txz
[121arm64-quarterly-job-14] Installing pkg-1.13.2...
[121arm64-quarterly-job-14] Extracting pkg-1.13.2: .......... done
===> CombBLAS-1.6.2_5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of CombBLAS-1.6.2_5
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by CombBLAS-1.6.2_5 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by CombBLAS-1.6.2_5 for building
=> SHA256 Checksum OK for CombBLAS_beta_16_2.tgz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by CombBLAS-1.6.2_5 for building
===> Extracting for CombBLAS-1.6.2_5
=> SHA256 Checksum OK for CombBLAS_beta_16_2.tgz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for CombBLAS-1.6.2_5
===> Applying FreeBSD patches for CombBLAS-1.6.2_5
===========================================================================
=======================<phase: build-depends >============================
===> CombBLAS-1.6.2_5 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.16.5.txz
[121arm64-quarterly-job-14] Installing cmake-3.16.5...
[121arm64-quarterly-job-14] `-- Installing curl-7.69.1...
[121arm64-quarterly-job-14] | `-- Installing ca_root_nss-3.51...
[121arm64-quarterly-job-14] | `-- Extracting ca_root_nss-3.51: ........ done
[121arm64-quarterly-job-14] | `-- Installing libnghttp2-1.40.0...
[121arm64-quarterly-job-14] | `-- Extracting libnghttp2-1.40.0: .......... done
[121arm64-quarterly-job-14] `-- Extracting curl-7.69.1: .......... done
[121arm64-quarterly-job-14] `-- Installing expat-2.2.8...
[121arm64-quarterly-job-14] `-- Extracting expat-2.2.8: .......... done
[121arm64-quarterly-job-14] `-- Installing jsoncpp-1.9.2...
[121arm64-quarterly-job-14] `-- Extracting jsoncpp-1.9.2: .......... done
[121arm64-quarterly-job-14] `-- Installing libarchive-3.4.2,1...
[121arm64-quarterly-job-14] | `-- Installing liblz4-1.9.2_1,1...
[121arm64-quarterly-job-14] | `-- Extracting liblz4-1.9.2_1,1: .......... done
[121arm64-quarterly-job-14] | `-- Installing lzo2-2.10_1...
[121arm64-quarterly-job-14] | `-- Extracting lzo2-2.10_1: .......... done
[121arm64-quarterly-job-14] `-- Extracting libarchive-3.4.2,1: .......... done
[121arm64-quarterly-job-14] `-- Installing libuv-1.35.0...
<snip>
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> CombBLAS-1.6.2_5 depends on file: /usr/local/bin/cmake - found
===> Returning to build of CombBLAS-1.6.2_5
===> CombBLAS-1.6.2_5 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.10.0,2.txz
[121arm64-quarterly-job-14] Installing ninja-1.10.0,2...
[121arm64-quarterly-job-14] `-- Installing python37-3.7.7...
[121arm64-quarterly-job-14] | `-- Installing gettext-runtime-0.20.1...
[121arm64-quarterly-job-14] | | `-- Installing indexinfo-0.3.1...
[121arm64-quarterly-job-14] | | `-- Extracting indexinfo-0.3.1: .... done
[121arm64-quarterly-job-14] | `-- Extracting gettext-runtime-0.20.1: .......... done
[121arm64-quarterly-job-14] | `-- Installing libffi-3.2.1_3...
[121arm64-quarterly-job-14] | `-- Extracting libffi-3.2.1_3: .......... done
[121arm64-quarterly-job-14] | `-- Installing readline-8.0.4...
[121arm64-quarterly-job-14] | `-- Extracting readline-8.0.4: .......... done
[121arm64-quarterly-job-14] `-- Extracting python37-3.7.7: .......... done
[121arm64-quarterly-job-14] Extracting ninja-1.10.0,2: ........ done
=====
Message from python37-3.7.7:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py37-gdbm databases/py-gdbm at py37
py37-sqlite3 databases/py-sqlite3 at py37
py37-tkinter x11-toolkits/py-tkinter at py37
===> CombBLAS-1.6.2_5 depends on executable: ninja - found
===> Returning to build of CombBLAS-1.6.2_5
===========================================================================
=======================<phase: lib-depends >============================
===> CombBLAS-1.6.2_5 depends on shared library: libmpi.so - not found
===> Installing existing package /packages/All/mpich-3.2.1_6.txz
[121arm64-quarterly-job-14] Installing mpich-3.2.1_6...
[121arm64-quarterly-job-14] `-- Installing gcc9-9.3.0...
[121arm64-quarterly-job-14] | `-- Installing binutils-2.33.1_2,1...
[121arm64-quarterly-job-14] | `-- Extracting binutils-2.33.1_2,1: .......... done
[121arm64-quarterly-job-14] | `-- Installing gmp-6.2.0...
[121arm64-quarterly-job-14] | `-- Extracting gmp-6.2.0: .......... done
[121arm64-quarterly-job-14] | `-- Installing mpc-1.1.0_2...
[121arm64-quarterly-job-14] | | `-- Installing mpfr-4.0.2...
[121arm64-quarterly-job-14] | | `-- Extracting mpfr-4.0.2: .......... done
[121arm64-quarterly-job-14] | `-- Extracting mpc-1.1.0_2: ......... done
[121arm64-quarterly-job-14] `-- Extracting gcc9-9.3.0: .......... done
[121arm64-quarterly-job-14] `-- Installing hwloc-1.11.11...
[121arm64-quarterly-job-14] | `-- Installing libpciaccess-0.16...
[121arm64-quarterly-job-14] | | `-- Installing pciids-20200324...
[121arm64-quarterly-job-14] | | `-- Extracting pciids-20200324: ..... done
[121arm64-quarterly-job-14] | `-- Extracting libpciaccess-0.16: ......... done
[121arm64-quarterly-job-14] | `-- Installing libxml2-2.9.10...
[121arm64-quarterly-job-14] | `-- Extracting libxml2-2.9.10: .......... done
[121arm64-quarterly-job-14] `-- Extracting hwloc-1.11.11: .......... done
[121arm64-quarterly-job-14] `-- Installing perl5-5.30.2...
[121arm64-quarterly-job-14] `-- Extracting perl5-5.30.2: .......... done
[121arm64-quarterly-job-14] Extracting mpich-3.2.1_6: .......... done
=====
Message from gcc9-9.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc9
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from perl5-5.30.2:
--
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:
#!/usr/local/bin/perl
or
#!/usr/bin/env perl
The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
=====
Message from mpich-3.2.1_6:
--
===> NOTICE:
The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> CombBLAS-1.6.2_5 depends on shared library: libmpi.so - found (/usr/local/lib/libmpi.so)
===> Returning to build of CombBLAS-1.6.2_5
===========================================================================
=======================<phase: configure >============================
===> Configuring for CombBLAS-1.6.2_5
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/combblas/work/.build
-- The C compiler identification is Clang 8.0.1
-- The CXX compiler identification is Clang 8.0.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found MPI_C: /usr/local/lib/libmpi.so (found version "3.1")
-- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/math/combblas/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for CombBLAS-1.6.2_5
[1/62] /usr/bin/c++ -DCombBLAS_EXPORTS -DTHREADED -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/psort-1.0/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include/CombBLAS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/graph500-1.2/generator/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -MD -MT CMakeFiles/CombBLAS.dir/src/CommGrid.cpp.o -MF CMakeFiles/CombBLAS.dir/src/CommGrid.cpp.o.d -o CMakeFiles/CombBLAS.dir/src/CommGrid.cpp.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/CommGrid.cpp
[2/62] /usr/bin/cc -DCombBLAS_EXPORTS -DTHREADED -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/psort-1.0/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include/CombBLAS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/graph500-1.2/generator/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT CMakeFiles/CombBLAS.dir/src/mmio.c.o -MF CMakeFiles/CombBLAS.dir/src/mmio.c.o.d -o CMakeFiles/CombBLAS.dir/src/mmio.c.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/mmio.c
/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/mmio.c:138:40: warning: format specifies type 'long long *' but the argument has type 'int64_t *' (aka 'long *') [-Wformat]
if (sscanf(line, "%lld %lld %lld", M, N, nz) == 3)
~~~~ ^
%ld
/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/mmio.c:138:43: warning: format specifies type 'long long *' but the argument has type 'int64_t *' (aka 'long *') [-Wformat]
if (sscanf(line, "%lld %lld %lld", M, N, nz) == 3)
~~~~ ^
%ld
/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/mmio.c:138:46: warning: format specifies type 'long long *' but the argument has type 'int64_t *' (aka 'long *') [-Wformat]
if (sscanf(line, "%lld %lld %lld", M, N, nz) == 3)
~~~~ ^~
%ld
/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/mmio.c:144:54: warning: format specifies type 'long long *' but the argument has type 'int64_t *' (aka 'long *') [-Wformat]
num_items_read = fscanf(f, "%lld %lld %lld", M, N, nz);
~~~~ ^
%ld
/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/mmio.c:144:57: warning: format specifies type 'long long *' but the argument has type 'int64_t *' (aka 'long *') [-Wformat]
num_items_read = fscanf(f, "%lld %lld %lld", M, N, nz);
~~~~ ^
%ld
/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/mmio.c:144:60: warning: format specifies type 'long long *' but the argument has type 'int64_t *' (aka 'long *') [-Wformat]
num_items_read = fscanf(f, "%lld %lld %lld", M, N, nz);
~~~~ ^~
%ld
6 warnings generated.
[3/62] /usr/bin/c++ -DCombBLAS_EXPORTS -DTHREADED -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/psort-1.0/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include/CombBLAS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/graph500-1.2/generator/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -MD -MT CMakeFiles/CombBLAS.dir/src/MPIType.cpp.o -MF CMakeFiles/CombBLAS.dir/src/MPIType.cpp.o.d -o CMakeFiles/CombBLAS.dir/src/MPIType.cpp.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/MPIType.cpp
[4/62] /usr/bin/c++ -DCombBLAS_EXPORTS -DTHREADED -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/psort-1.0/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include/CombBLAS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/graph500-1.2/generator/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -MD -MT CMakeFiles/CombBLAS.dir/src/MPIOp.cpp.o -MF CMakeFiles/CombBLAS.dir/src/MPIOp.cpp.o.d -o CMakeFiles/CombBLAS.dir/src/MPIOp.cpp.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/MPIOp.cpp
[5/62] /usr/bin/c++ -DCombBLAS_EXPORTS -DTHREADED -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/psort-1.0/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include/CombBLAS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/graph500-1.2/generator/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -MD -MT CMakeFiles/CombBLAS.dir/src/MemoryPool.cpp.o -MF CMakeFiles/CombBLAS.dir/src/MemoryPool.cpp.o.d -o CMakeFiles/CombBLAS.dir/src/MemoryPool.cpp.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/MemoryPool.cpp
[6/62] /usr/bin/c++ -DCombBLAS_EXPORTS -DTHREADED -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/psort-1.0/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/include/CombBLAS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/graph500-1.2/generator/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -MD -MT CMakeFiles/CombBLAS.dir/src/hash.cpp.o -MF CMakeFiles/CombBLAS.dir/src/hash.cpp.o.d -o CMakeFiles/CombBLAS.dir/src/hash.cpp.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/src/hash.cpp
[7/62] /usr/bin/c++ -DUsortlib_EXPORTS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include/usort -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -MD -MT usort/CMakeFiles/Usortlib.dir/src/parUtils.cpp.o -MF usort/CMakeFiles/Usortlib.dir/src/parUtils.cpp.o.d -o usort/CMakeFiles/Usortlib.dir/src/parUtils.cpp.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/src/parUtils.cpp
FAILED: usort/CMakeFiles/Usortlib.dir/src/parUtils.cpp.o
/usr/bin/c++ -DUsortlib_EXPORTS -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include -I/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include/usort -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -MD -MT usort/CMakeFiles/Usortlib.dir/src/parUtils.cpp.o -MF usort/CMakeFiles/Usortlib.dir/src/parUtils.cpp.o.d -o usort/CMakeFiles/Usortlib.dir/src/parUtils.cpp.o -c /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/src/parUtils.cpp
In file included from /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/src/parUtils.cpp:11:
In file included from /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include/usort/parUtils.h:324:
In file included from /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include/usort/parUtils.tcc:27:
In file included from /wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include/usort/ompUtils.h:26:
/wrkdirs/usr/ports/math/combblas/work/CombBLAS_beta_16_2/usort/include/usort/ompUtils.tcc:2:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/combblas
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