[exp - 121amd64-default-build-as-user][biology/pbcopper] Failed for pbcopper-0.4.1_4 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Mar 6 20:56:00 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: head/biology/pbcopper/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Log URL: http://package19.nyi.freebsd.org/data/121amd64-default-build-as-user/527801/logs/pbcopper-0.4.1_4.log
Build URL: http://package19.nyi.freebsd.org/build.html?mastername=121amd64-default-build-as-user&build=527801
Log:
=>> Building biology/pbcopper
build started at Fri Mar 6 20:54:52 UTC 2020
port directory: /usr/ports/biology/pbcopper
package name: pbcopper-0.4.1_4
building for: FreeBSD 121amd64-default-build-as-user-job-05 12.1-RELEASE-p2 FreeBSD 12.1-RELEASE-p2 amd64
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/pbcopper/Makefile 519824 2019-12-11 17:53:48Z jbeich $
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=======================<phase: check-sanity >============================
===> NOTICE:
The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> pbcopper-0.4.1_4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.13.2.txz
[121amd64-default-build-as-user-job-05] Installing pkg-1.13.2...
[121amd64-default-build-as-user-job-05] Extracting pkg-1.13.2: .......... done
===> pbcopper-0.4.1_4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pbcopper-0.4.1_4
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_4 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_4 for building
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> NOTICE:
The pbcopper port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by pbcopper-0.4.1_4 for building
===> Extracting for pbcopper-0.4.1_4
=> SHA256 Checksum OK for PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for pbcopper-0.4.1_4
===> Applying FreeBSD patches for pbcopper-0.4.1_4
===========================================================================
=======================<phase: build-depends >============================
===> pbcopper-0.4.1_4 depends on executable: meson - not found
===> Installing existing package /packages/All/meson-0.53.2.txz
[121amd64-default-build-as-user-job-05] Installing meson-0.53.2...
[121amd64-default-build-as-user-job-05] `-- Installing ninja-1.10.0,2...
[121amd64-default-build-as-user-job-05] | `-- Installing python37-3.7.6...
[121amd64-default-build-as-user-job-05] | | `-- Installing gettext-runtime-0.20.1...
[121amd64-default-build-as-user-job-05] | | `-- Installing indexinfo-0.3.1...
[121amd64-default-build-as-user-job-05] | | `-- Extracting indexinfo-0.3.1: .... done
[121amd64-default-build-as-user-job-05] | | `-- Extracting gettext-runtime-0.20.1: .......... done
[121amd64-default-build-as-user-job-05] | | `-- Installing libffi-3.2.1_3...
[121amd64-default-build-as-user-job-05] | | `-- Extracting libffi-3.2.1_3: .......... done
[121amd64-default-build-as-user-job-05] | | `-- Installing readline-8.0.4...
[121amd64-default-build-as-user-job-05] | | `-- Extracting readline-8.0.4: .......... done
[121amd64-default-build-as-user-job-05] | `-- Extracting python37-3.7.6: .......... done
[121amd64-default-build-as-user-job-05] `-- Extracting ninja-1.10.0,2: ........ done
[121amd64-default-build-as-user-job-05] `-- Installing py37-setuptools-44.0.0...
[121amd64-default-build-as-user-job-05] `-- Extracting py37-setuptools-44.0.0: .......... done
[121amd64-default-build-as-user-job-05] Extracting meson-0.53.2: .......... done
=====
Message from python37-3.7.6:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py37-gdbm databases/py-gdbm at py37
py37-sqlite3 databases/py-sqlite3 at py37
py37-tkinter x11-toolkits/py-tkinter at py37
===> pbcopper-0.4.1_4 depends on executable: meson - found
===> Returning to build of pbcopper-0.4.1_4
===> pbcopper-0.4.1_4 depends on executable: ninja - found
===========================================================================
=======================<phase: lib-depends >============================
===> pbcopper-0.4.1_4 depends on shared library: libboost_regex.so - not found
===> Installing existing package /packages/All/boost-libs-1.72.0.txz
[121amd64-default-build-as-user-job-05] Installing boost-libs-1.72.0...
[121amd64-default-build-as-user-job-05] `-- Installing icu-65.1,1...
[121amd64-default-build-as-user-job-05] `-- Extracting icu-65.1,1: .......... done
[121amd64-default-build-as-user-job-05] Extracting boost-libs-1.72.0: .......... done
=====
Message from boost-libs-1.72.0:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> pbcopper-0.4.1_4 depends on shared library: libboost_regex.so - found (/usr/local/lib/libboost_regex.so)
===> Returning to build of pbcopper-0.4.1_4
===========================================================================
=======================<phase: configure >============================
===> Configuring for pbcopper-0.4.1_4
The Meson build system
Version: 0.53.2
Source dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1
Build dir: /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/_build
Build type: native build
Project name: pbcopper
Project version: 0.4.1
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include '
Appending LDFLAGS from environment: ['-fstack-protector-strong']
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
Appending CXXFLAGS from environment: '-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include '
Appending LDFLAGS from environment: ['-fstack-protector-strong']
Appending CPPFLAGS from environment: '-isystem /usr/local/include'
C++ compiler for the host machine: c++ (clang 8.0.1 "FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1)")
C++ linker for the host machine: c++ ld.lld 8.0.1
Host machine cpu family: x86_64
Host machine cpu: x86_64
Compiler for C++ supports arguments -Wduplicated-cond: NO
Compiler for C++ supports arguments -Wduplicated-branches: NO
Compiler for C++ supports arguments -Wlogical-op: NO
Compiler for C++ supports arguments -Wrestrict: NO
Compiler for C++ supports arguments -Wnull-dereference: YES
Compiler for C++ supports arguments -Wuseless-cast: NO
Compiler for C++ supports arguments -Wdouble-promotion: YES
Compiler for C++ supports arguments -Wshadow: YES
Compiler for C++ supports arguments -Wformat=1: NO
Run-time dependency threads found: YES
Run-time dependency Boost found: YES 1.72
Configuring PbcopperVersion.cpp using configuration
Build targets in project: 3
Found ninja-1.10.0 at /usr/local/bin/ninja
===========================================================================
=======================<phase: build >============================
===> Building for pbcopper-0.4.1_4
[1/22] /usr/local/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 0.4.1 /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility @COPPER_GIT_SHA1@ '(.*)' /wrkdirs/usr/ports/biology/pbcopper/work/pbcopper-0.4.1/src/utility/git describe --always '--dirty=*'
[2/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -MF 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperGitHash.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -c src/utility/PbcopperGitHash.cpp
[3/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_CLI.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_CLI.cpp.o' -c ../src/cli/CLI.cpp
[4/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_HelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_HelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_HelpPrinter.cpp.o' -c ../src/cli/HelpPrinter.cpp
[5/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_Interface.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_Interface.cpp.o' -c ../src/cli/Interface.cpp
[6/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_Option.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_Option.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_Option.cpp.o' -c ../src/cli/Option.cpp
[7/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_Parser.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_Parser.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_Parser.cpp.o' -c ../src/cli/Parser.cpp
[8/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_Results.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_Results.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_Results.cpp.o' -c ../src/cli/Results.cpp
[9/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_VersionPrinter.cpp.o' -c ../src/cli/VersionPrinter.cpp
[10/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_toolcontract_JsonPrinter.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_toolcontract_JsonPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_toolcontract_JsonPrinter.cpp.o' -c ../src/cli/toolcontract/JsonPrinter.cpp
[11/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/cli_toolcontract_ResolvedToolContract.cpp.o' -MF 'src/25a6634@@pbcopper at sha/cli_toolcontract_ResolvedToolContract.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/cli_toolcontract_ResolvedToolContract.cpp.o' -c ../src/cli/toolcontract/ResolvedToolContract.cpp
[12/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/data_Cigar.cpp.o' -MF 'src/25a6634@@pbcopper at sha/data_Cigar.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/data_Cigar.cpp.o' -c ../src/data/Cigar.cpp
[13/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/data_CigarOperation.cpp.o' -MF 'src/25a6634@@pbcopper at sha/data_CigarOperation.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/data_CigarOperation.cpp.o' -c ../src/data/CigarOperation.cpp
[14/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/data_MovieName.cpp.o' -MF 'src/25a6634@@pbcopper at sha/data_MovieName.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/data_MovieName.cpp.o' -c ../src/data/MovieName.cpp
[15/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/data_RSMovieName.cpp.o' -MF 'src/25a6634@@pbcopper at sha/data_RSMovieName.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/data_RSMovieName.cpp.o' -c ../src/data/RSMovieName.cpp
[16/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/logging_Logging.cpp.o' -MF 'src/25a6634@@pbcopper at sha/logging_Logging.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/logging_Logging.cpp.o' -c ../src/logging/Logging.cpp
[17/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/utility_CallbackTimer.cpp.o' -MF 'src/25a6634@@pbcopper at sha/utility_CallbackTimer.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/utility_CallbackTimer.cpp.o' -c ../src/utility/CallbackTimer.cpp
[18/22] c++ -Isrc/25a6634@@pbcopper at sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -pthread -Wnull-dereference -Wdouble-promotion -Wshadow -MD -MQ 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -MF 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperVersion.cpp.o.d' -o 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -c src/utility/PbcopperVersion.cpp
[19/22] c++ -o src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 'src/25a6634@@pbcopper at sha/cli_CLI.cpp.o' 'src/25a6634@@pbcopper at sha/cli_HelpPrinter.cpp.o' 'src/25a6634@@pbcopper at sha/cli_Interface.cpp.o' 'src/25a6634@@pbcopper at sha/cli_Option.cpp.o' 'src/25a6634@@pbcopper at sha/cli_Parser.cpp.o' 'src/25a6634@@pbcopper at sha/cli_Results.cpp.o' 'src/25a6634@@pbcopper at sha/cli_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper at sha/cli_toolcontract_JsonPrinter.cpp.o' 'src/25a6634@@pbcopper at sha/cli_toolcontract_ResolvedToolContract.cpp.o' 'src/25a6634@@pbcopper at sha/data_Cigar.cpp.o' 'src/25a6634@@pbcopper at sha/data_CigarOperation.cpp.o' 'src/25a6634@@pbcopper at sha/data_MovieName.cpp.o' 'src/25a6634@@pbcopper at sha/data_RSMovieName.cpp.o' 'src/25a6634@@pbcopper at sha/logging_Logging.cpp.o' 'src/25a6634@@pbcopper at sha/utility_CallbackTimer.cpp.o' 'src/25a6634@@pbcopper at sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -Wl,--as-needed -Wl,--no-undefined
-Wl,-O1 -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.0.4.1 -Wl,--end-group -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -pthread
[20/22] /usr/local/bin/meson --internal symbolextractor src/libpbcopper.so.0.4.1 'src/25a6634@@pbcopper at sha/libpbcopper.so.0.4.1.symbols'
[21/22] c++ -Iexamples/cli_demo/c7429bd@@cli_demo at exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo at exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo at exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo at exe/main.cpp.o' -c ../examples/cli_demo/main.cpp
FAILED: examples/cli_demo/c7429bd@@cli_demo at exe/main.cpp.o
c++ -Iexamples/cli_demo/c7429bd@@cli_demo at exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -Xclang -fcolor-diagnostics -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++11 -O3 -O2 -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo at exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo at exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo at exe/main.cpp.o' -c ../examples/cli_demo/main.cpp
In file included from ../examples/cli_demo/main.cpp:2:
In file included from ../include/pbcopper/cli/CLI.h:12:
In file included from ../include/pbcopper/cli/Interface.h:11:
In file included from ../include/pbcopper/cli/Option.h:14:
In file included from ../include/pbcopper/json/JSON.h:7:
./include/pbcopper/json/internal/json.hpp:1229:9: error: static_assert failed due to requirement 'sizeof(nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer>) == 0' "could not find from_json() method in T's namespace"
static_assert(sizeof(BasicJsonType) == 0,
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~
./include/pbcopper/json/internal/json.hpp:1244:16: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::call<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
return call(j, val, priority_tag<1> {});
^
./include/pbcopper/json/internal/json.hpp:10801:9: note: in instantiation of function template specialization 'nlohmann::detail::from_json_fn::operator()<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer>, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
::nlohmann::from_json(std::forward<BasicJsonType>(j), val);
^
./include/pbcopper/json/internal/json.hpp:13329:36: note: in instantiation of function template specialization 'nlohmann::adl_serializer<std::__1::basic_string_view<char, std::__1::char_traits<char> >, void>::from_json<const nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer> &, std::__1::basic_string_view<char, std::__1::char_traits<char> > >' requested here
JSONSerializer<ValueType>::from_json(*this, ret);
^
./include/pbcopper/json/internal/json.hpp:13591:16: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer>::get<std::__1::basic_string_view<char, std::__1::char_traits<char> >, std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
return get<ValueType>();
^
/usr/include/c++/v1/string:888:29: note: in instantiation of function template specialization 'nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer>::operator basic_string_view<std::__1::basic_string_view<char, std::__1::char_traits<char> >, 0>' requested here
{__self_view __sv = __t; return assign(__sv);}
^
./examples/cli_demo/main.cpp:82:15: note: in instantiation of function template specialization 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::operator=<nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer>, void>' requested here
s.tempDir = args["temp_dir"];
^
1 error generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/pbcopper
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