[package - head-armv7-default][science/avogadrolibs] Failed for avogadrolibs-1.92.1_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sun Dec 29 08:53:01 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $
Log URL: http://beefy12.nyi.freebsd.org/data/head-armv7-default/p521042_s356139/logs/avogadrolibs-1.92.1_1.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p521042_s356139
Log:
=>> Building science/avogadrolibs
build started at Sun Dec 29 08:43:16 UTC 2019
port directory: /usr/ports/science/avogadrolibs
package name: avogadrolibs-1.92.1_1
building for: FreeBSD head-armv7-default-job-08 13.0-CURRENT FreeBSD 13.0-CURRENT 1300071 arm
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $
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!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> avogadrolibs-1.92.1_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.12.0.txz
[head-armv7-default-job-08] Installing pkg-1.12.0...
[head-armv7-default-job-08] Extracting pkg-1.12.0: .......... done
===> avogadrolibs-1.92.1_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of avogadrolibs-1.92.1_1
===========================================================================
<snip>
[15/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/sphere_ao_depth_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs
[16/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/sphere_ao_bake_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs
[17/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/sphere_ao_bake_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs
[18/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/sphere_ao_render_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs
[19/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/sphere_ao_render_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs
[20/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/textlabelbase_fs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs
[21/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering && /wrkdirs/usr/ports/science/avogadrolibs/work/.build/bin/encodefile /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/textlabelbase_vs.glsl /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs
[22/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/arrowgeometry.cpp
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/arrowgeometry.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/arrowgeometry.h:54:8: warning: 'render' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
void render(const Camera& camera);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/drawable.h:92:16: note: overridden virtual function is here
virtual void render(const Camera& camera);
^
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/arrowgeometry.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/arrowgeometry.h:59:8: warning: 'clear' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
void clear();
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/drawable.h:115:16: note: overridden virtual function is here
virtual void clear();
^
2 warnings generated.
[23/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/bufferobject.cpp
[24/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/camera.cpp
[25/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/cylindergeometry.cpp
[26/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/drawable.cpp
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[47/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/visitor.cpp
[48/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/volumegeometry.cpp
[49/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/vrmlvisitor.cpp
[50/458] /nxb-bin/usr/bin/c++ -DAvogadroRendering_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -MF avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/ambientocclusionspheregeometry.cpp
[51/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroRendering.so.1 -o lib/libAvogadroRendering.so.1.92.0 avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrend
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cpp.o avogadro/rendering/CMakeFiles/Avogadro!
Rendering.dir/texture2d.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/libGLEW.so /usr/local/lib/libGL.so /usr/local/lib/libGLU.so && :
[52/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroRendering.so.1.92.0 lib/libAvogadroRendering.so.1 lib/libAvogadroRendering.so && :
[53/458] /nxb-bin/usr/bin/c++ -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/utilities/resdata/resdataparse.cxx
[54/458] : && /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o bin/resdataparse && :
[55/458] /nxb-bin/usr/bin/cc -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct/struct.c
[56/458] /nxb-bin/usr/bin/cc -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -MF thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o.d -o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct/struct_endian.c
[57/458] : && /usr/local/bin/cmake -E remove thirdparty/struct/libstruct.a && /nxb-bin/usr/bin/ar qc thirdparty/struct/libstruct.a thirdparty/struct/CMakeFiles/struct.dir/struct.c.o thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o && /nxb-bin/usr/bin/ranlib thirdparty/struct/libstruct.a && :
[58/458] /nxb-bin/usr/bin/cc -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/libgwavi.dir/gwavi.c.o -MF thirdparty/libgwavi/CMakeFiles/libgwavi.dir/gwavi.c.o.d -o thirdparty/libgwavi/CMakeFiles/libgwavi.dir/gwavi.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/libgwavi/gwavi.c
[59/458] /nxb-bin/usr/bin/cc -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/libgwavi.dir/fileio.c.o -MF thirdparty/libgwavi/CMakeFiles/libgwavi.dir/fileio.c.o.d -o thirdparty/libgwavi/CMakeFiles/libgwavi.dir/fileio.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/libgwavi/fileio.c
[60/458] /nxb-bin/usr/bin/cc -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/libgwavi.dir/avi-utils.c.o -MF thirdparty/libgwavi/CMakeFiles/libgwavi.dir/avi-utils.c.o.d -o thirdparty/libgwavi/CMakeFiles/libgwavi.dir/avi-utils.c.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/libgwavi/avi-utils.c
[61/458] : && /usr/local/bin/cmake -E remove thirdparty/libgwavi/liblibgwavi.a && /nxb-bin/usr/bin/ar qc thirdparty/libgwavi/liblibgwavi.a thirdparty/libgwavi/CMakeFiles/libgwavi.dir/gwavi.c.o thirdparty/libgwavi/CMakeFiles/libgwavi.dir/fileio.c.o thirdparty/libgwavi/CMakeFiles/libgwavi.dir/avi-utils.c.o && /nxb-bin/usr/bin/ranlib thirdparty/libgwavi/liblibgwavi.a && :
[62/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/coordinateblockgenerator.cpp
[63/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/crystaltools.cpp
[64/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/cube.cpp
[65/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/elements.cpp
[66/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/gaussianset.cpp
[67/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/gaussiansettools.cpp
[68/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/graph.cpp
[69/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/mesh.cpp
[70/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/molecule.cpp
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[75/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/slaterset.cpp
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[77/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/spacegroups.cpp
[78/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/symbolatomtyper.cpp
[79/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/unitcell.cpp
[80/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/variantmap.cpp
[81/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/version.cpp
[82/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/avospglib.cpp
[83/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroCore.so.1 -o lib/libAvogadroCore.so.1.92.0 avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/na
meatomtyper.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/libsymspg.so && :
[84/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroCore.so.1.92.0 lib/libAvogadroCore.so.1 lib/libAvogadroCore.so && :
[85/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work
/avogadrolibs-1.92.1/avogadro/io/cjsonformat.cpp
[86/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga
drolibs-1.92.1/avogadro/io/cmlformat.cpp
[87/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga
drolibs-1.92.1/avogadro/io/dcdformat.cpp
[88/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av
ogadrolibs-1.92.1/avogadro/io/fileformat.cpp
[89/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /wrkdirs/usr/ports/science
/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp:29:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool read(std::istream& inStream, Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here
virtual bool read(std::istream& in, Core::Molecule& molecule) = 0;
^
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp:29:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool write(std::ostream& outStream, const Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here
virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0;
^
2 warnings generated.
[90/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolib
s/work/avogadrolibs-1.92.1/avogadro/io/gromacsformat.cpp
[91/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga
drolibs-1.92.1/avogadro/io/mdlformat.cpp
[92/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av
ogadrolibs-1.92.1/avogadro/io/vaspformat.cpp
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool read(std::istream& inStream, Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here
virtual bool read(std::istream& in, Core::Molecule& molecule) = 0;
^
In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.cpp:17:
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
bool write(std::ostream& outStream, const Core::Molecule& mol);
^
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here
virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0;
^
2 warnings generated.
[93/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga
drolibs-1.92.1/avogadro/io/pdbformat.cpp
[94/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga
drolibs-1.92.1/avogadro/io/xyzformat.cpp
[95/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga
drolibs-1.92.1/avogadro/io/trrformat.cpp
[96/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/w
ork/avogadrolibs-1.92.1/avogadro/io/lammpsformat.cpp
[97/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av
ogadrolibs-1.92.1/avogadro/io/mmtfformat.cpp
[98/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroIO.so.1 -o lib/libAvogadroIO.so.1.92.0 avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o avogadro/io/CMakeFiles/Av
ogadroIO.dir/lammpsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib: lib/libAvogadroCore.so.1.92.0 thirdparty/struct/libstruct.a && :
[99/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroIO.so.1.92.0 lib/libAvogadroIO.so.1 lib/libAvogadroIO.so && :
[100/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.cmake Release
[101/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/ui_customelementdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/customelementdialog.ui
[102/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/rcc --name qtgui --output /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/qrc_qtgui.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/qtgui.qrc
[103/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -
MF avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp
[104/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -MF avogadro/qtgui/
CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/backgroundfileformat.cpp
[105/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -MF avogadro/qtgui/CMake
Files/AvogadroQtGui.dir/containerwidget.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/containerwidget.cpp
[106/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -MF avogadro/qtgui/C
MakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/customelementdialog.cpp
[107/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -MF avogadro/qtgui/CMake
Files/AvogadroQtGui.dir/elementdetail_p.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/elementdetail_p.cpp
/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/elementdetail_p.cpp:85:24: warning: 'width' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
int pixelWidth = fm2.width(symbol);
^
/usr/local/include/qt5/QtGui/qfontmetrics.h:107:5: note: 'width' has been explicitly marked deprecated here
QT_DEPRECATED_X("Use QFontMetrics::horizontalAdvance")
^
/usr/local/include/qt5/QtCore/qglobal.h:294:33: note: expanded from macro 'QT_DEPRECATED_X'
# define QT_DEPRECATED_X(text) Q_DECL_DEPRECATED_X(text)
^
/usr/local/include/qt5/QtCore/qcompilerdetection.h:649:55: note: expanded from macro 'Q_DECL_DEPRECATED_X'
# define Q_DECL_DEPRECATED_X(text) __attribute__ ((__deprecated__(text)))
^
1 warning generated.
[108/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -MF avogadro/qtgui/CMakeFi
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[109/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -MF avogadro/qtgui/CMa
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[110/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -MF avogadro/qtgui/CMake
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[111/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -MF avogadro/qtgui/CMak
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[112/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -MF avogadro/qtgui/CMak
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[113/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -MF avogadro/qtgui/CM
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[114/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -MF avogadro/qtgui/CMakeFi
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[116/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -MF avogadro/qtgui/CMake
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/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/interfacewidget.cpp:91:27: warning: 'width' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations]
int charWidth = metrics.width(QStringLiteral("i7OPlmWn9/")) / 10;
^
/usr/local/include/qt5/QtGui/qfontmetrics.h:107:5: note: 'width' has been explicitly marked deprecated here
QT_DEPRECATED_X("Use QFontMetrics::horizontalAdvance")
^
/usr/local/include/qt5/QtCore/qglobal.h:294:33: note: expanded from macro 'QT_DEPRECATED_X'
# define QT_DEPRECATED_X(text) Q_DECL_DEPRECATED_X(text)
^
/usr/local/include/qt5/QtCore/qcompilerdetection.h:649:55: note: expanded from macro 'Q_DECL_DEPRECATED_X'
# define Q_DECL_DEPRECATED_X(text) __attribute__ ((__deprecated__(text)))
^
1 warning generated.
[117/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -MF avogadro/qtgui/CMakeFi
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[121/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -MF avogadro/qtgui/
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[122/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -MF avogadro/qtgui/CMa
keFiles/AvogadroQtGui.dir/periodictableview.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/periodictableview.cpp
[123/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -MF avogadro/qtgui/CMakeFil
es/AvogadroQtGui.dir/pythonscript.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/pythonscript.cpp
[124/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -MF avogadro/qtgui/CMakeFiles
/AvogadroQtGui.dir/rwmolecule.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/rwmolecule.cpp
[125/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -MF avogadro/qtgui/CMakeFile
s/AvogadroQtGui.dir/sceneplugin.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/sceneplugin.cpp
[126/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -MF avogadro/qtgui/CMak
eFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/scenepluginmodel.cpp
[127/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -MF avogadro/qtgui/CMakeFil
es/AvogadroQtGui.dir/scriptloader.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/scriptloader.cpp
[128/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -MF avogadro/qtgui/CMakeFiles
/AvogadroQtGui.dir/toolplugin.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/toolplugin.cpp
[129/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -MF avogadro/qtgui/CMakeFiles/
AvogadroQtGui.dir/utilities.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/utilities.cpp
[130/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -MF avogadro/qtgui/CMakeFile
s/AvogadroQtGui.dir/viewfactory.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/viewfactory.cpp
[131/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -MF avogadro/qtgui/CMakeFiles/
AvogadroQtGui.dir/qrc_qtgui.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -c avogadro/qtgui/qrc_qtgui.cpp
[132/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroQtGui.so.1 -o lib/libAvogadroQtGui.so.1.92.0 avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o a
vogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o avogadro/qtgui/CMakeF
iles/AvogadroQtGui.dir/scriptloader.cpp.o av!
ogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib:/usr/local/lib/qt5:/usr/local/lib: lib/libAvogadroIO.so.1.92.0 /usr/local/lib/qt5/libQt5Widgets.so.5.13.2 lib/libAvogadroCore.so.1.92.0 /usr/local/lib/qt5/libQt5Gui.so.5.13.2 /usr/local/lib/qt5/libQt5Core.so.5.13.2 -Wl,-rpath-link,/usr/local/lib && :
[133/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroQtGui.so.1.92.0 lib/libAvogadroQtGui.so.1 lib/libAvogadroQtGui.so && :
[134/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene_autogen.dir/AutogenInfo.cmake Release
FAILED: avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene_autogen avogadro/qtplugins/symmetry/SymmetryScene_autogen/mocs_compilation.cpp
cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene_autogen.dir/AutogenInfo.cmake Release
Fatal error 'thread 0xf4143a00 exits with resources held!' at line 321 in file /usr/local/poudriere/jails/head-armv7/usr/src/lib/libthr/thread/thr_exit.c (errno = 0)
qemu: uncaught target signal 6 (Abort trap) - core dumped
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/avogadrolibs
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