[Bug 216346] emulators/linux_base-c6: Mathematica 10.x doesn't work with recent linux_base-c6 or -c7
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bugzilla-noreply at freebsd.org
Sun Jan 22 14:42:04 UTC 2017
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=216346
--- Comment #2 from Osamu Matsuda <omatsuda000 at gmail.com> ---
Below is the required information for the case of using mathematica 10.0.
> What is inside /usr/local/bin/mathematica?
/usr/local/bin/mathematica is linked to
/usr/local/Wolfram/Mathematica/10.0/Executables/mathematica.
In the directory /usr/local/Wolfram/Mathematica/10.0/Executables/,
there are 7 shell scripts, namely MathKernel, Mathematica,
WolframKernel, math mathematica, mcc, and wolfram. Each of them needs
to be patched according to the FreeBSD handbook. Below I put the diff
of them.
-------- begin -----------------------
*** MathKernel.orig Tue Oct 21 23:40:32 2014
--- MathKernel Wed Oct 22 00:13:27 2014
***************
*** 5,10 ****
--- 5,11 ----
# Make certain that ${PATH} includes /usr/bin and /bin
PATH="/usr/bin:/bin:${PATH}"
+ SystemIDList=Linux
# Is systemid being passed on the command-line?
case "$1" in
***************
*** 50,56 ****
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `exec test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
--- 51,57 ----
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
***************
*** 132,138 ****
if [ "${SystemID}" = "Linux" -o "${SystemID}" = "Linux-x86-64" ]; then
if [ -z "${OMP_NUM_THREADS}" ]; then
! OMP_NUM_THREADS=`cat /proc/cpuinfo | grep '^processor.: [0-9]*$'
| wc -l | tr -d ' '`;
export OMP_NUM_THREADS;
fi
fi
--- 133,139 ----
if [ "${SystemID}" = "Linux" -o "${SystemID}" = "Linux-x86-64" ]; then
if [ -z "${OMP_NUM_THREADS}" ]; then
! OMP_NUM_THREADS=`cat /compat/linux/proc/cpuinfo | grep
'^processor.: [0-9]*$' | wc -l | tr -d ' '`;
export OMP_NUM_THREADS;
fi
fi
*** Mathematica.orig Tue Oct 21 23:40:44 2014
--- Mathematica Wed Oct 22 00:15:20 2014
***************
*** 5,11 ****
# Make certain that ${PATH} includes /usr/bin and /bin
PATH="/usr/bin:/bin:${PATH}"
!
--- 5,11 ----
# Make certain that ${PATH} includes /usr/bin and /bin
PATH="/usr/bin:/bin:${PATH}"
! SystemIDList=Linux
***************
*** 46,52 ****
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `exec test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
--- 46,52 ----
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
*** math.orig Tue Oct 21 23:40:32 2014
--- math Wed Oct 22 00:16:33 2014
***************
*** 5,10 ****
--- 5,11 ----
# Make certain that ${PATH} includes /usr/bin and /bin
PATH="/usr/bin:/bin:${PATH}"
+ SystemIDList=Linux
# Is systemid being passed on the command-line?
case "$1" in
***************
*** 50,56 ****
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `exec test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
--- 51,57 ----
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
***************
*** 132,138 ****
if [ "${SystemID}" = "Linux" -o "${SystemID}" = "Linux-x86-64" ]; then
if [ -z "${OMP_NUM_THREADS}" ]; then
! OMP_NUM_THREADS=`cat /proc/cpuinfo | grep '^processor.: [0-9]*$'
| wc -l | tr -d ' '`;
export OMP_NUM_THREADS;
fi
fi
--- 133,139 ----
if [ "${SystemID}" = "Linux" -o "${SystemID}" = "Linux-x86-64" ]; then
if [ -z "${OMP_NUM_THREADS}" ]; then
! OMP_NUM_THREADS=`cat /compat/linux/proc/cpuinfo | grep
'^processor.: [0-9]*$' | wc -l | tr -d ' '`;
export OMP_NUM_THREADS;
fi
fi
*** mathematica.orig Tue Oct 21 23:40:44 2014
--- mathematica Wed Oct 22 00:18:33 2014
***************
*** 5,11 ****
# Make certain that ${PATH} includes /usr/bin and /bin
PATH="/usr/bin:/bin:${PATH}"
!
--- 5,11 ----
# Make certain that ${PATH} includes /usr/bin and /bin
PATH="/usr/bin:/bin:${PATH}"
! SystemIDList=Linux
***************
*** 46,52 ****
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `exec test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
--- 46,52 ----
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
*** mcc.orig Tue Oct 21 23:41:07 2014
--- mcc Wed Oct 22 00:19:08 2014
***************
*** 5,10 ****
--- 5,11 ----
# Make certain that ${PATH} includes /usr/bin and /bin
PATH="/usr/bin:/bin:${PATH}"
+ SystemIDList=Linux
# Determine the SystemID by examining the output of `uname -s` and
# `uname -m`. Failsafe to SystemIDList=Unknown.
***************
*** 57,63 ****
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `exec test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
--- 58,64 ----
# the output of ls -l on the symlink to find the link target. Reset
# ${Script}.
LinkDirectory=`pwd`
! while `test -L "${Script}"`; do
ScriptDirectory=`dirname "${Script}"`
Script=`ls -l "${Script}" | sed -e 's/.*-> //g'`
cd "${ScriptDirectory}"
-------- end -------------------
It might also be necessary to ensure that /usr/local/bin/MathematicaScript is
linked to
/usr/local/Wolfram/Mathematica/10.0/SystemFiles/Kernel/Binaries/Linux/MathematicaScript
> What is the output of "find /compat/linux/dev"?
~ 1007 % find /compat/linux/dev
/compat/linux/dev
/compat/linux/dev/shm
/compat/linux/dev/.shm.bJOs6e5BTk10
> Is linux_base the only dependency or do you have other linux packages installed?
I also installed emulators/linux-c6 or emulators/linux-c7 metaport
which also has installed a bunch of linux related ports.
> Do you have linprocfs mounted on /compat/linux/proc?
> Do you have tmpfs mounted on /compat/linux/dev/shm?
Yes for both.
~ 1003 % mount
/dev/mirror/root on / (ufs, NFS exported, local, journaled soft-updates)
devfs on /dev (devfs, local, multilabel)
procfs on /proc (procfs, local)
fdescfs on /dev/fd (fdescfs)
linprocfs on /compat/linux/proc (linprocfs, local)
tmpfs on /compat/linux/dev/shm (tmpfs, local)
> What is the output of "sysctl compat"?
~ 1005 % sysctl compat
compat.linux32.maxvmem: 0
compat.linux32.maxssiz: 67108864
compat.linux32.maxdsiz: 536870912
compat.linux.oss_version: 198144
compat.linux.osrelease: 2.6.18
compat.linux.osname: Linux
compat.ia32.maxvmem: 0
compat.ia32.maxssiz: 67108864
compat.ia32.maxdsiz: 536870912
> What is the output of "ls -l /usr/local/Wolfram/Mathematica/10.0/Executables/math"?
~ 1006 % ls -l /usr/local/Wolfram/Mathematica/10.0/Executables/math
-rwxr-xr-x 1 root wheel 5311 Aug 30 02:53
/usr/local/Wolfram/Mathematica/10.0/Executables/math*
As mentioned above, this is the patched version.
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