git: 8b8c1272ea64 - main - biology/jalview: Broken on 11
Yuri Victorovich
yuri at FreeBSD.org
Sat Jun 5 18:53:16 UTC 2021
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=8b8c1272ea64f9db05d8b5cfed709881429df479
commit 8b8c1272ea64f9db05d8b5cfed709881429df479
Author: Yuri Victorovich <yuri at FreeBSD.org>
AuthorDate: 2021-06-05 17:43:00 +0000
Commit: Yuri Victorovich <yuri at FreeBSD.org>
CommitDate: 2021-06-05 18:53:07 +0000
biology/jalview: Broken on 11
Also fix number of lines in pkg-descr, and replace space with tab.
Reported by: fallout
---
biology/jalview/Makefile | 4 +++-
biology/jalview/pkg-descr | 3 ---
2 files changed, 3 insertions(+), 4 deletions(-)
diff --git a/biology/jalview/Makefile b/biology/jalview/Makefile
index e9159ecb079b..67bee6fe6514 100644
--- a/biology/jalview/Makefile
+++ b/biology/jalview/Makefile
@@ -14,6 +14,8 @@ COMMENT= Viewer and editor for multiple sequence alignments
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
+BROKEN_FreeBSD_11= gradle daemon systematically fails on 11: The message received from the daemon indicates that the daemon has disappeared.
+
BUILD_DEPENDS= gradle:devel/gradle
USE_JAVA= yes
@@ -38,7 +40,7 @@ NO_ARCH= yes
DEV_UPDATE_MODE= no
-DEPS_CACHE_DIR= ${WRKDIR}
+DEPS_CACHE_DIR= ${WRKDIR}
.if (${DEV_UPDATE_MODE} == "yes")
post-build:
diff --git a/biology/jalview/pkg-descr b/biology/jalview/pkg-descr
index 4fae9fde95ba..f8f1378b879d 100644
--- a/biology/jalview/pkg-descr
+++ b/biology/jalview/pkg-descr
@@ -19,7 +19,4 @@ o Sequence feature retrieval and display on the alignment.
o Print your alignment with colours and annotations.
o Output alignments as HTML pages, images (PNG) or postscript (EPS).
-If you use Jalview in your work, please quote this publication. Clamp, M., et
-al. (2004), The Jalview Java Alignment Editor. Bioinformatics, 12, 426-7
-
WWW: https://www.jalview.org
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