git: dfcece22a2cb - main - biology/py-bigwig: Python access to bigWig files using libBigWig

[Jason W. Bacon]

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=dfcece22a2cb1b45e0cbf8531709250fde686119

commit dfcece22a2cb1b45e0cbf8531709250fde686119
Author:     Jason W. Bacon <jwb at FreeBSD.org>
AuthorDate: 2021-04-12 23:21:41 +0000
Commit:     Jason W. Bacon <jwb at FreeBSD.org>
CommitDate: 2021-04-12 23:24:20 +0000

    biology/py-bigwig: Python access to bigWig files using libBigWig
    
    A python extension, written in C, for quick access to bigBed files and access
    to and creation of bigWig files. This extension uses libBigWig for local and
    remote file access.
---
 biology/Makefile            |  1 +
 biology/py-bigwig/Makefile  | 21 +++++++++++++++++++++
 biology/py-bigwig/distinfo  |  3 +++
 biology/py-bigwig/pkg-descr |  5 +++++
 4 files changed, 30 insertions(+)

diff --git a/biology/Makefile b/biology/Makefile
index 73af8b5788bd..25eba238a6ad 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -123,6 +123,7 @@
     SUBDIR += protomol
     SUBDIR += psi88
     SUBDIR += py-Genesis-PyAPI
+    SUBDIR += py-bigwig
     SUBDIR += py-biom-format
     SUBDIR += py-biopython
     SUBDIR += py-bx-python
diff --git a/biology/py-bigwig/Makefile b/biology/py-bigwig/Makefile
new file mode 100644
index 000000000000..ab33b4650777
--- /dev/null
+++ b/biology/py-bigwig/Makefile
@@ -0,0 +1,21 @@
+PORTNAME=	pyBigWig
+DISTVERSION=	0.3.18
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	jwb at FreeBSD.org
+COMMENT=	Python access to bigWig files using libBigWig
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE.txt
+
+LIB_DEPENDS=	libcurl.so:ftp/curl
+
+USES=		localbase python
+USE_PYTHON=	autoplist distutils
+
+post-install:
+	@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyBigWig.so
+
+.include <bsd.port.mk>
diff --git a/biology/py-bigwig/distinfo b/biology/py-bigwig/distinfo
new file mode 100644
index 000000000000..35e26a9f88d0
--- /dev/null
+++ b/biology/py-bigwig/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1617288519
+SHA256 (pyBigWig-0.3.18.tar.gz) = 4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc
+SIZE (pyBigWig-0.3.18.tar.gz) = 64834
diff --git a/biology/py-bigwig/pkg-descr b/biology/py-bigwig/pkg-descr
new file mode 100644
index 000000000000..825fb27ac6f0
--- /dev/null
+++ b/biology/py-bigwig/pkg-descr
@@ -0,0 +1,5 @@
+A python extension, written in C, for quick access to bigBed files and access
+to and creation of bigWig files. This extension uses libBigWig for local and
+remote file access.
+
+WWW: https://pypi.org/project/pyBigWig/