cvs commit: ports/biology/p5-Bio-Phylo Makefile distinfo pkg-plist

[Aaron Dalton]

aaron       2006-05-19 23:18:32 UTC

  FreeBSD ports repository

  Modified files:
    biology/p5-Bio-Phylo Makefile distinfo pkg-plist 
  Log:
  - Updated from 0.07 to 0.12
  
  Approved by:    tobez (implicit)
  
  0.08 20/Feb/2006 15:14
                         Improved referential integrity between nodes,
                                  taxa, and data.
                         Implemented Fastnexus parser
                         Node object silently implements Bio::Tree::NodeI
                                  interface if BioPerl is installed
                         Tree object silently implements Bio::Tree::TreeI
                                  interface if BioPerl is installed
                         Added convertor methods for XML and CIPRES
                         Implemented more Matrix methods
                         Implemented symbol tables in Bio::Phylo::Util::CONSTANT
                         Implemented visit method for listable objects
                         Implemented caching infrastructure for calculations
                         Changed object-model to inside-out arrays
                         Added Biodiversity measures code by Aki Mimoto
                         Moved constants and exceptions to Bio::Phylo::Util::*
                         Fixed memory leak due to circular references
  
  Revision  Changes    Path
  1.2       +13 -6     ports/biology/p5-Bio-Phylo/Makefile
  1.2       +3 -3      ports/biology/p5-Bio-Phylo/distinfo
  1.2       +9 -3      ports/biology/p5-Bio-Phylo/pkg-plist