[Bug 279330] devel/doxygen: upgrade to 1.13.1

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From: <bugzilla-noreply_at_freebsd.org>
Date: Sat, 04 Jan 2025 20:00:08 UTC

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=279330

--- Comment #12 from Dima Panov <fluffy@FreeBSD.org> ---
py-breathe still not support Doxygen 1.9.7+ yet, this is a main reason to delay
update. 
Upstream have open pull request since 2023 but no plans to incorporate it
declared. 

https://github.com/breathe-doc/breathe/pull/934

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