[package - 132i386-quarterly][science/py-scipy] Failed for py39-scipy-1.11.1 in configure/runaway
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Date: Tue, 10 Oct 2023 04:12:25 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: python@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy13/data/132i386-quarterly/32195e384156/logs/py39-scipy-1.11.1.log
Build URL: https://pkg-status.freebsd.org/beefy13/build.html?mastername=132i386-quarterly&build=32195e384156
Log:
=>> Building science/py-scipy
build started at Tue Oct 10 01:59:23 UTC 2023
port directory: /usr/ports/science/py-scipy
package name: py39-scipy-1.11.1
building for: FreeBSD 132i386-quarterly-job-10 13.2-RELEASE-p4 FreeBSD 13.2-RELEASE-p4 i386
maintained by: python@FreeBSD.org
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===> Use 'make config' to modify these settings
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=======================<phase: check-sanity >============================
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-scipy-1.11.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.7.pkg
[132i386-quarterly-job-10] Installing pkg-1.20.7...
[132i386-quarterly-job-10] Extracting pkg-1.20.7: .......... done
===> py39-scipy-1.11.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-scipy-1.11.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scipy-1.11.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scipy-1.11.1 for building
=> SHA256 Checksum OK for scipy-1.11.1.tar.gz.
=> SHA256 Checksum OK for scipy-html-1.11.1.zip.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scipy-1.11.1 for building
===> Extracting for py39-scipy-1.11.1
=> SHA256 Checksum OK for scipy-1.11.1.tar.gz.
=> SHA256 Checksum OK for scipy-html-1.11.1.zip.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-scipy-1.11.1
===> Applying FreeBSD patches for py39-scipy-1.11.1 from /usr/ports/science/py-scipy/files
===========================================================================
=======================<phase: build-depends >============================
===> py39-scipy-1.11.1 depends on package: py39-numpy>=1.16,1<1.26,1 - not found
===> Installing existing package /packages/All/py39-numpy-1.25.0_1,1.pkg
[132i386-quarterly-job-10] Installing py39-numpy-1.25.0_1,1...
[132i386-quarterly-job-10] `-- Installing gcc12-12.2.0_6...
[132i386-quarterly-job-10] | `-- Installing binutils-2.40_4,1...
<snip>
===> Returning to build of py39-scipy-1.11.1
===> py39-scipy-1.11.1 depends on package: unzip>0 - not found
===> Installing existing package /packages/All/unzip-6.0_8.pkg
[132i386-quarterly-job-10] Installing unzip-6.0_8...
[132i386-quarterly-job-10] Extracting unzip-6.0_8: .......... done
===> py39-scipy-1.11.1 depends on package: unzip>0 - found
===> Returning to build of py39-scipy-1.11.1
===> py39-scipy-1.11.1 depends on executable: gfortran12 - found
===> py39-scipy-1.11.1 depends on executable: cython-3.9 - not found
===> Installing existing package /packages/All/py39-cython-0.29.36.pkg
[132i386-quarterly-job-10] Installing py39-cython-0.29.36...
[132i386-quarterly-job-10] Extracting py39-cython-0.29.36: .......... done
===> py39-scipy-1.11.1 depends on executable: cython-3.9 - found
===> Returning to build of py39-scipy-1.11.1
===> py39-scipy-1.11.1 depends on package: py39-setuptools>=63.1.0 - found
===> py39-scipy-1.11.1 depends on file: /usr/local/bin/python3.9 - found
===> py39-scipy-1.11.1 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> py39-scipy-1.11.1 depends on shared library: libblas.so - not found
===> Installing existing package /packages/All/blas-3.11.0_1.pkg
[132i386-quarterly-job-10] Installing blas-3.11.0_1...
[132i386-quarterly-job-10] Extracting blas-3.11.0_1: ........ done
===> py39-scipy-1.11.1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> Returning to build of py39-scipy-1.11.1
===> py39-scipy-1.11.1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-scipy-1.11.1
setup.py:390: UserWarning: Unrecognized setuptools command ('config --fcompiler=gnu95'), proceeding with generating Cython sources and expanding templates
warnings.warn("Unrecognized setuptools command ('{}'), proceeding with "
setup.py:506: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
from numpy.distutils.core import setup
Running from SciPy source directory.
Running scipy/linalg/_generate_pyx.py
Running scipy/stats/_generate_pyx.py
Running scipy/special/_generate_pyx.py
Processing scipy/interpolate/_ppoly.pyx
Processing scipy/interpolate/_bspl.pyx
Processing scipy/interpolate/_rgi_cython.pyx
Processing scipy/interpolate/interpnd.pyx
Processing scipy/linalg/_matfuncs_expm.pyx.in
Processing scipy/linalg/_solve_toeplitz.pyx
Processing scipy/linalg/_cythonized_array_utils.pyx
Processing scipy/linalg/_decomp_lu_cython.pyx
Processing scipy/linalg/cython_lapack.pyx
Processing scipy/linalg/cython_blas.pyx
Processing scipy/linalg/_matfuncs_sqrtm_triu.pyx
Processing scipy/linalg/_decomp_update.pyx.in
Processing scipy/stats/_qmc_cy.pyx
Processing scipy/stats/_sobol.pyx
Processing scipy/stats/_stats.pyx
Processing scipy/stats/_biasedurn.pyx
Processing scipy/stats/_boost/src/ncx2_ufunc.pyx
Processing scipy/stats/_boost/src/beta_ufunc.pyx
Processing scipy/stats/_boost/src/skewnorm_ufunc.pyx
Processing scipy/stats/_boost/src/hypergeom_ufunc.pyx
Processing scipy/stats/_boost/src/ncf_ufunc.pyx
Processing scipy/stats/_boost/src/binom_ufunc.pyx
Processing scipy/stats/_boost/src/nbinom_ufunc.pyx
Processing scipy/stats/_boost/src/nct_ufunc.pyx
Processing scipy/stats/_boost/src/invgauss_ufunc.pyx
Processing scipy/stats/_rcont/rcont.pyx
Processing scipy/stats/_levy_stable/levyst.pyx
Processing scipy/stats/_unuran/unuran_wrapper.pyx
Processing scipy/spatial/_qhull.pyx
Processing scipy/spatial/_hausdorff.pyx
Processing scipy/spatial/_ckdtree.pyx
Processing scipy/spatial/_voronoi.pyx
Processing scipy/spatial/transform/_rotation.pyx
Processing scipy/cluster/_hierarchy.pyx
Processing scipy/cluster/_vq.pyx
Processing scipy/cluster/_optimal_leaf_ordering.pyx
Processing scipy/special/cython_special.pyx
Processing scipy/special/_ufuncs_cxx.pyx
Processing scipy/special/_test_internal.pyx
Processing scipy/special/_ufuncs.pyx
Processing scipy/special/_ellip_harm_2.pyx
Processing scipy/special/_comb.pyx
Processing scipy/sparse/_csparsetools.pyx.in
Processing scipy/sparse/csgraph/_shortest_path.pyx
Processing scipy/sparse/csgraph/_tools.pyx
Processing scipy/sparse/csgraph/_flow.pyx
Processing scipy/sparse/csgraph/_reordering.pyx
Processing scipy/sparse/csgraph/_min_spanning_tree.pyx
Processing scipy/sparse/csgraph/_traversal.pyx
Processing scipy/sparse/csgraph/_matching.pyx
Processing scipy/io/matlab/_mio_utils.pyx
Processing scipy/io/matlab/_mio5_utils.pyx
Processing scipy/io/matlab/_streams.pyx
Processing scipy/_lib/_ccallback_c.pyx
Processing scipy/_lib/messagestream.pyx
Processing scipy/_lib/_test_deprecation_call.pyx
Processing scipy/_lib/_test_deprecation_def.pyx
Processing scipy/ndimage/src/_ni_label.pyx
Processing scipy/ndimage/src/_cytest.pyx
Processing scipy/signal/_spectral.pyx
Processing scipy/signal/_upfirdn_apply.pyx
Processing scipy/signal/_max_len_seq_inner.pyx
Processing scipy/signal/_peak_finding_utils.pyx
Processing scipy/signal/_sosfilt.pyx
Processing scipy/optimize/_group_columns.pyx
Processing scipy/optimize/_bglu_dense.pyx
Processing scipy/optimize/tnc/_moduleTNC.pyx
Processing scipy/optimize/_trlib/_trlib.pyx
Processing scipy/optimize/_lsq/givens_elimination.pyx
Processing scipy/optimize/cython_optimize/_zeros.pyx.in
Processing scipy/optimize/_highs/cython/src/_highs_wrapper.pyx
Processing scipy/optimize/_highs/cython/src/_highs_constants.pyx
Processing scipy/fftpack/convolve.pyx
/usr/local/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:196: UserWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
warnings.warn(msg)
Cythonizing sources
INFO: lapack_opt_info:
INFO: lapack_armpl_info:
INFO: customize UnixCCompiler
INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
creating /tmp/tmpie3il2la/tmp
creating /tmp/tmpie3il2la/tmp/tmpie3il2la
INFO: compile options: '-MMD -MF /tmp/tmpie3il2la/file.c.d -c'
INFO: cc: /tmp/tmpie3il2la/file.c
INFO: libraries armpl_lp64_mp not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: NOT AVAILABLE
INFO:
INFO: lapack_mkl_info:
INFO: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: NOT AVAILABLE
INFO:
INFO: lapack_ssl2_info:
INFO: libraries fjlapackexsve not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: NOT AVAILABLE
INFO:
INFO: openblas_lapack_info:
INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
creating /tmp/tmpmn6fz6al/tmp
creating /tmp/tmpmn6fz6al/tmp/tmpmn6fz6al
INFO: compile options: '-c'
INFO: cc: /tmp/tmpmn6fz6al/source.c
INFO: cc /tmp/tmpmn6fz6al/tmp/tmpmn6fz6al/source.o -L/usr/local/lib -L/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../ -lopenblas -lgfortran -o /tmp/tmpmn6fz6al/a.out
INFO: FOUND:
INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran']
INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: language = c
INFO: define_macros = [('HAVE_CBLAS', None)]
INFO:
INFO: FOUND:
INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran']
INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: language = c
INFO: define_macros = [('HAVE_CBLAS', None)]
INFO:
INFO: blas_opt_info:
INFO: blas_armpl_info:
INFO: libraries armpl_lp64_mp not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: NOT AVAILABLE
INFO:
INFO: blas_mkl_info:
INFO: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: NOT AVAILABLE
INFO:
INFO: blas_ssl2_info:
INFO: libraries fjlapackexsve not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: NOT AVAILABLE
INFO:
INFO: blis_info:
INFO: libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: NOT AVAILABLE
INFO:
INFO: openblas_info:
INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
creating /tmp/tmpr25igd71/tmp
creating /tmp/tmpr25igd71/tmp/tmpr25igd71
INFO: compile options: '-c'
INFO: cc: /tmp/tmpr25igd71/source.c
INFO: cc /tmp/tmpr25igd71/tmp/tmpr25igd71/source.o -L/usr/local/lib -L/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../ -lopenblas -lgfortran -o /tmp/tmpr25igd71/a.out
INFO: FOUND:
INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran']
INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: language = c
INFO: define_macros = [('HAVE_CBLAS', None)]
INFO:
INFO: FOUND:
INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran']
INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/i386-portbld-freebsd13.2/12.2.0/../../../']
INFO: language = c
INFO: define_macros = [('HAVE_CBLAS', None)]
INFO:
=>> Killing runaway build after 7200 seconds with no output