[Bug 284746] biology/iqtree: update 2.3.6 => 2.4.0

From: <bugzilla-noreply_at_freebsd.org>
Date: Tue, 11 Feb 2025 20:05:54 UTC
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=284746

            Bug ID: 284746
           Summary: biology/iqtree: update 2.3.6 => 2.4.0
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
               URL: https://github.com/iqtree/iqtree2/releases
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: jrm@freebsd.org
          Reporter: alster@vinterdalen.se
                CC: jrm@freebsd.org
             Flags: maintainer-feedback?(jrm@freebsd.org)
          Assignee: jrm@freebsd.org
 Attachment #257423 maintainer-approval?(jrm@freebsd.org)
             Flags:
                CC: jrm@freebsd.org

Created attachment 257423
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=257423&action=edit
[PATCH] biology/iqtree: update 2.3.6 => 2.4.0

Version 2.4.0 Latest

This release includes a major bug fix of AliSim (Bug ID #333). This bug
occurred due to the use of identical random seed numbers for generating the
root sequence and simulating its first descendant sequence, which resulted in
identical sequences at the root and its first child node.

For more detailed information about the bug, its effects, the impacted release
versions, and a list of papers that might be affected, please refer to our
comprehensive bug report.

We apologize for any inconvenience this bug may have caused.

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