[Bug 279752] biology/libsbml: Fix build with libxml2 2.12 and newer

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From: <bugzilla-noreply_at_freebsd.org>
Date: Sat, 15 Jun 2024 06:03:11 UTC

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=279752

            Bug ID: 279752
           Summary: biology/libsbml: Fix build with libxml2 2.12 and newer
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: sunpoet@FreeBSD.org
          Reporter: diizzy@FreeBSD.org
            Blocks: 279705
             Flags: maintainer-feedback?(sunpoet@FreeBSD.org)
          Assignee: sunpoet@FreeBSD.org

Created attachment 251466
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=251466&action=edit
Patch for libsbml

Backport upstream commit a3e217851f18d3c5e8e2b0082fb98176738491e8

Reference:
https://github.com/sbmlteam/libsbml/commit/a3e217851f18d3c5e8e2b0082fb98176738491e8

Compile and runtime tested on FreeBSD 14.0-RELEASE (amd64) (make, make
check-plist, make test)

Poudriere testport OK 13.2-RELEASE (amd64)
Poudriere testport OK 14.0-RELEASE (amd64)

Additional note (unrelated),
Warning: Possible REINPLACE_CMD issues:
- - REINPLACE_CMD ran, but did not modify file contents: CMakeLists.txt


Referenced Bugs:

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=279705
[Bug 279705] textproc/libxml2: Update to 2.13.0
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