From nobody Wed Dec 11 17:01:21 2024 X-Original-To: ports-bugs@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Y7hhL28Ymz5gBRG for ; Wed, 11 Dec 2024 17:01:22 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R10" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Y7hhL14rcz4FyN for ; Wed, 11 Dec 2024 17:01:22 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1733936482; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=t9lOtn1XQtyNa0fjYu6icz6/o8Sqqwj2NWpetdmbQes=; b=A02F0jAWrLDjV/PdzbKN586Uvt19VNnGmTaOXPH9tj23wgDK1lz7hqpDFKCkxLfhn8nIzW /JDjknV77wnqBFZq/l7e9caU6ld+4fPDuwqY/58HXkW/Gf+HrRryu/hTAG4AHiVOOIn660 aUfmdFFx7DHYvGZtc/qVOqfE0S2PMIVzuwCaUxAiCRwZFA9A0KFPkJ92yqdAxtfBFevQ7t 3ozFK0k412afNoU0e76MWr/4zREbT1WT2wJ8XMfiBOc7ykfO81FORkXAoEGL2zi9HFjM6h DljvkoyciVh91UqNfKAONLybuJYC73jZHj1giLzd2Y/axYrlxABxsCBZdCzmyw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1733936482; a=rsa-sha256; cv=none; b=VstzPv0HePmaNn0qg0uJ9K+SNN0MC2P2uFu+4Uj1nMCZ1IK4R6DbpBFPEoLBi/TfDLnV6o gpbbrZjfdhCSNV2hXk4oqXneHYc15cQgzeyaHOZImGyHDOpyFItisFJWVcz7vMbrs3g4ns DXOyN5/ng81VO4/prp4xJZyhW28PDtEJYRDLivv89aFEEfVQRmIrhYlj4f650yGBDgcNCk 83YuK4StGKcoEQ+zaIXvUD1DsEVMmh/xQWUN3m1RmXLJGF2TiSCnOpIHJ7JybdoLcdL77O QrTA9rlmdvs2iIdCgKagWmnyvr9pWCu+rykZWQSzt6fxVwiPxU5o1Q+18Yp0Pg== Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2610:1c1:1:606c::50:1d]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Y7hhL0bvXzG7p for ; Wed, 11 Dec 2024 17:01:22 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.5]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id 4BBH1Lr0005971 for ; Wed, 11 Dec 2024 17:01:21 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id 4BBH1LpN005970 for ports-bugs@FreeBSD.org; Wed, 11 Dec 2024 17:01:21 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: =?UTF-8?B?W0J1ZyAyODMyNjFdIGJpb2xvZ3kvc3VicmVhZDogdXBkYXRlIDIu?= =?UTF-8?B?MC4yIOKGkiAyLjAuOA==?= Date: Wed, 11 Dec 2024 17:01:21 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Some People X-Bugzilla-Who: alster@vinterdalen.se X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: jwb@freebsd.org X-Bugzilla-Flags: maintainer-feedback? X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform bug_file_loc op_sys bug_status bug_severity priority component assigned_to reporter cc flagtypes.name attachments.created Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated List-Id: Ports bug reports List-Archive: https://lists.freebsd.org/archives/freebsd-ports-bugs List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: freebsd-ports-bugs@freebsd.org Sender: owner-freebsd-ports-bugs@FreeBSD.org MIME-Version: 1.0 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D283261 Bug ID: 283261 Summary: biology/subread: update 2.0.2 =E2=86=92 2.0.8 Product: Ports & Packages Version: Latest Hardware: Any URL: https://subread.sourceforge.net/ OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: jwb@freebsd.org Reporter: alster@vinterdalen.se CC: jwb@freebsd.org Assignee: jwb@freebsd.org Flags: maintainer-feedback?(jwb@freebsd.org) Attachment #255783 maintainer-approval?(jwb@freebsd.org) Flags: CC: jwb@freebsd.org Created attachment 255783 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D255783&action= =3Dedit [PATCH] biology/subread: update 2.0.2 =E2=86=92 2.0.8 Release 2.0.8, 4 November 2024 Fixed a bug in featureCounts that cannot load annotations of very long chromosomes. Release 2.0.7, 17 October 2024 Deprecated the '--maxMOp' parameter. Updated User's Guide. Release 2.0.6, 10 May 2023 Fixed a bug in featureCounts when counting reads supporting each exon-exon junction in long-read data. Release 2.0.5, 17 April 2023 Update the inbuilt gene annotation for mm39. Release 2.0.4, 27 February 2023 '--fraction' parameter now works with '--largestOverlap' parameter in featureCounts. Value provided to '--fracOverlap' parameter in featureCounts is now precise= ly applied for read filtering. '-J' parameter in featureCounts now considers all the reads in the input for junction counting. Release 2.0.3, 15 July 2021 Users guide updated --=20 You are receiving this mail because: You are the assignee for the bug.=