[Bug 258478] biology/emboss: Add wrapper to eliminate need for altered PATH
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Date: Mon, 13 Sep 2021 13:43:39 UTC
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=258478 Bug ID: 258478 Summary: biology/emboss: Add wrapper to eliminate need for altered PATH Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: wen@FreeBSD.org Reporter: jwb@freebsd.org Flags: maintainer-feedback?(wen@FreeBSD.org) Assignee: wen@FreeBSD.org Created attachment 227873 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=227873&action=edit Unified diff adding C wrapper The attached patch turns emboss commands into subcommands much like those used by bwa, samtools, bedtools, etc. This allows users to run emboss commands without altering their PATH, and allows simultaneous access to conflicting commands such as /usr/local/bin/garnier and /usr/local/emboss/bin/garnier. E.g. emboss garnier # Runs /usr/local/emboss/bin/garnier garnier # Runs /usr/local/bin/garnier (from biology/fasta) -- You are receiving this mail because: You are the assignee for the bug.