[Bug 260389] biology/bowtie: update to 1.3.1

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From: <bugzilla-noreply_at_freebsd.org>
Date: Mon, 13 Dec 2021 15:30:13 UTC

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=260389

            Bug ID: 260389
           Summary: biology/bowtie: update to 1.3.1
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: jwb@freebsd.org
          Reporter: pkubaj@FreeBSD.org
          Assignee: jwb@freebsd.org
             Flags: maintainer-feedback?(jwb@freebsd.org)

Created attachment 230078
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=230078&action=edit
patch

- fixes build on powerpc64 and powerpc64le (probably also aarch64 and maybe
riscv64, but untested),
- move to USES=compiler:gcc-c++11-lib to link to libc++,
- all the patches are now not necessary

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