[package - 141releng-armv7-default][math/R-cran-Rmpfr] Failed for R-cran-Rmpfr-1.0.0 in stage
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Date: Sat, 01 Feb 2025 17:46:59 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: tota@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/141releng-armv7-default/86e28c84a7e0/logs/R-cran-Rmpfr-1.0.0.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=141releng-armv7-default&build=86e28c84a7e0
Log:
=>> Building math/R-cran-Rmpfr
build started at Sat Feb 1 17:46:40 UTC 2025
port directory: /usr/ports/math/R-cran-Rmpfr
package name: R-cran-Rmpfr-1.0.0
building for: FreeBSD 141releng-armv7-default-job-03 14.1-RELEASE-p6 FreeBSD 14.1-RELEASE-p6 1401000 arm
maintained by: tota@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 431 Nov 28 01:06 /usr/ports/math/R-cran-Rmpfr/Makefile
Ports top last git commit: 86e28c84a7e
Ports top unclean checkout: no
Port dir last git commit: 013c106e37b
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500028
Jail OSVERSION: 1401000
Job Id: 03
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tota@FreeBSD.org
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F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-Rmpfr/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-Rmpfr/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-Rmpfr/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-Rmpfr/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-Rmpfr/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-Rmpfr/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--End MAKE_ENV--
--PLIST_SUB--
R_MOD_DIR=lib/R/library/Rmpfr OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/Rmpfr" EXAMPLESDIR="share/examples/Rmpfr" DATADIR="share/Rmpfr" WWWDIR="www/Rmpfr" ETCDIR="etc/Rmpfr"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Rmpfr DOCSDIR=/usr/local/share/doc/Rmpfr EXAMPLESDIR=/usr/local/share/examples/Rmpfr WWWDIR=/usr/local/www/Rmpfr ETCDIR=/usr/local/etc/Rmpfr
--End SUB_LIST--
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
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GID=0
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data seg size (kbytes, -d) 524288
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max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> R-cran-Rmpfr-1.0.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[141releng-armv7-default-job-03] Installing pkg-1.21.3...
[141releng-armv7-default-job-03] Extracting pkg-1.21.3: .......... done
===> R-cran-Rmpfr-1.0.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of R-cran-Rmpfr-1.0.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by R-cran-Rmpfr-1.0.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by R-cran-Rmpfr-1.0.0 for building
=> SHA256 Checksum OK for Rmpfr_1.0-0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2+ accepted by the user
===> Fetching all distfiles required by R-cran-Rmpfr-1.0.0 for building
===> Extracting for R-cran-Rmpfr-1.0.0
=> SHA256 Checksum OK for Rmpfr_1.0-0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for R-cran-Rmpfr-1.0.0
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> R-cran-Rmpfr-1.0.0 depends on file: /usr/local/bin/R - not found
===> Installing existing package /packages/All/R-4.4.2.pkg
[141releng-armv7-default-job-03] Installing R-4.4.2...
[141releng-armv7-default-job-03] `-- Installing cairo-1.18.2,3...
[141releng-armv7-default-job-03] | `-- Installing fontconfig-2.15.0_3,1...
[141releng-armv7-default-job-03] | | `-- Installing expat-2.6.4...
[141releng-armv7-default-job-03] | | `-- Extracting expat-2.6.4: .......... done
[141releng-armv7-default-job-03] | | `-- Installing freetype2-2.13.3...
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[141releng-armv7-default-job-03] | | `-- Installing libffi-3.4.6...
<snip>
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[141releng-armv7-default-job-03] | | `-- Extracting tiff-4.7.0: .......... done
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[141releng-armv7-default-job-03] `-- Installing harfbuzz-10.2.0...
[141releng-armv7-default-job-03] | `-- Installing graphite2-1.3.14...
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[141releng-armv7-default-job-03] `-- Installing icu-74.2_1,1...
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[141releng-armv7-default-job-03] `-- Installing libXScrnSaver-1.2.4_1...
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[141releng-armv7-default-job-03] `-- Installing libXmu-1.1.4,1...
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[141releng-armv7-default-job-03] `-- Installing pango-1.55.5...
[141releng-armv7-default-job-03] | `-- Installing fribidi-1.0.16...
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[141releng-armv7-default-job-03] | `-- Installing libXft-2.3.8...
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[141releng-armv7-default-job-03] | `-- Installing libthai-0.1.29_1...
[141releng-armv7-default-job-03] | | `-- Installing libdatrie-0.2.13_2...
[141releng-armv7-default-job-03] | | `-- Extracting libdatrie-0.2.13_2: .......... done
[141releng-armv7-default-job-03] | `-- Extracting libthai-0.1.29_1: .......... done
[141releng-armv7-default-job-03] `-- Extracting pango-1.55.5: .......... done
[141releng-armv7-default-job-03] `-- Installing tcl86-8.6.16_2...
[141releng-armv7-default-job-03] `-- Extracting tcl86-8.6.16_2: .......... done
[141releng-armv7-default-job-03] `-- Installing tk86-8.6.16...
[141releng-armv7-default-job-03] `-- Extracting tk86-8.6.16: .......... done
[141releng-armv7-default-job-03] Extracting R-4.4.2: .......... done
==> Running trigger: fontconfig.ucl
Running fc-cache to build fontconfig cache...
==> Running trigger: gio-modules.ucl
Generating GIO modules cache
==> Running trigger: glib-schemas.ucl
Compiling glib schemas
No schema files found: doing nothing.
=====
Message from freetype2-2.13.3:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
=====
Message from python311-3.11.11:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
=====
Message from gcc13-13.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from ghostscript10-10.04.0:
--
This package installs a script named dvipdf that depends on dvips. If you
want to use this script you need to install print/tex-dvipsk.
===> R-cran-Rmpfr-1.0.0 depends on file: /usr/local/bin/R - found
===> Returning to build of R-cran-Rmpfr-1.0.0
===> R-cran-Rmpfr-1.0.0 depends on executable: gfortran13 - found
===> R-cran-Rmpfr-1.0.0 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> R-cran-Rmpfr-1.0.0 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so)
===> R-cran-Rmpfr-1.0.0 depends on shared library: libmpfr.so - found (/usr/local/lib/libmpfr.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for R-cran-Rmpfr-1.0.0
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===========================================================================
=======================<phase: run-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> R-cran-Rmpfr-1.0.0 depends on package: R-cran-gmp>=0.6.1 - not found
===> Installing existing package /packages/All/R-cran-gmp-0.7.5.pkg
[141releng-armv7-default-job-03] Installing R-cran-gmp-0.7.5...
[141releng-armv7-default-job-03] Extracting R-cran-gmp-0.7.5: .......... done
===> R-cran-Rmpfr-1.0.0 depends on package: R-cran-gmp>=0.6.1 - found
===> Returning to build of R-cran-Rmpfr-1.0.0
===> R-cran-Rmpfr-1.0.0 depends on file: /usr/local/bin/R - found
===> R-cran-Rmpfr-1.0.0 depends on executable: gfortran13 - found
===========================================================================
=======================<phase: stage >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Staging for R-cran-Rmpfr-1.0.0
===> Generating temporary packing list
* installing *source* package 'Rmpfr' ...
** package 'Rmpfr' successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking mpfr.h usability... yes
checking mpfr.h presence... yes
checking for mpfr.h... yes
checking gmp.h usability... yes
checking gmp.h presence... yes
checking for gmp.h... yes
checking for __gmpz_init in -lgmp... yes
checking for mpfr_init in -lmpfr... yes
checking for mpfr_digamma in -lmpfr... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: 'FreeBSD clang version 18.1.5 (https://github.com/llvm/llvm-project.git llvmorg-18.1.5-0-g617a15a9eac9)'
gmake[1]: Entering directory '/wrkdirs/usr/ports/math/R-cran-Rmpfr/work/Rmpfr/src'
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c Ops.c -o Ops.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c Summary.c -o Summary.o
cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -c convert.c -o convert.o
convert.c:71:21: error: use of undeclared identifier 'mpft_exp_t'
71 | r->_mpfr_exp = (mpft_exp_t) CAST_SIGNED(ex[0], unsigned int, int);
| ^
1 error generated.
gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:195: convert.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R-cran-Rmpfr/work/Rmpfr/src'
ERROR: compilation failed for package 'Rmpfr'
* removing '/wrkdirs/usr/ports/math/R-cran-Rmpfr/work/stage/usr/local/lib/R/library/Rmpfr'
*** Error code 1
Stop.
make: stopped in /usr/ports/math/R-cran-Rmpfr