From nobody Sun Sep 22 16:05:41 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4XBWF20J3Nz5X8Wc for ; Sun, 22 Sep 2024 16:05:42 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4XBWF14xTLz41W4 for ; Sun, 22 Sep 2024 16:05:41 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1727021141; a=rsa-sha256; cv=none; b=KbguolIpeo5cXiRxHpl53QUTMVSbu5kmQ3U4jXiYdxs+R2CsZSqus7EKUeQSTt22uaugmf BUI4Ew9XxFz7gchB0mSLwph2cqA+7MT6L5e2qMCtlceESTbaepD2wLKRsjSpAKzxUcHATH YNTQRtHHX1zxfg1wTILkvGYTMU4xAhm63vS/Hf2JiMCUQCiGrNuvE4exyuoiJOj0gF8Xbr +o4YgoPXA9cc90L1EY+nV/7DD3IFt4Co0S1Qc+d3TmkNb8ONUFrznSJnqFqQADdk+Mlyiz GpVS+KthV4FpiH7PmiKxeQx/vWuatth1XfKFT2VcA+unJ903NCiH6y3Nl/hT4A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1727021141; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=8V++xDfjmfEZMoPz0t9vkmHjoT5+hygwwnKE03Rnk/E=; b=lFZULt1AFVik4PXKCc8lx9PappVuQnNEOL7tkNXW0w9qrr4ZWC1RYXw3n0eJbXH0fawuuQ moP2A7mU/wtiZJekb7UP8g5zMg+eVr7EouVn2TqLaZOTjPZjEF7x48qkRugGARArTzIc06 GxNYVTk/3m9ZgKAP1Ov6n41lknBYs7Yh0+uK/VtSD77RcBxJ4a3scFNtdn2u+53MuFZaLw vZyG5KrWq3ro8aX8BP3ZXDSiQAhMC9FGAqPpfFRW8uNOrzrwRgAHKa92i5q7o4HCR64RnC AjaXVy3zyS37RzPttwzQqyCxDHHIAD5dBfsX4gg03+YIPoXKdK4/yd/lTbvEVw== Received: from package19.nyi.freebsd.org (package19.nyi.freebsd.org [IPv6:2610:1c1:1:607e::16:7]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4XBWF13wDkz1My6 for ; Sun, 22 Sep 2024 16:05:41 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1ef02 by package19.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on package19.nyi.freebsd.org); Sun, 22 Sep 2024 16:05:41 +0000 To: yuri@FreeBSD.org Subject: [exp - 140amd64-default-build-as-user][science/cif-tools] Failed for cif-tools-1.0.12 in configure Cc: pkg-fallout@FreeBSD.org Date: Sun, 22 Sep 2024 16:05:41 +0000 Message-Id: <66f04055.1ef02.1eebf629@package19.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/package19/data/140amd64-default-build-as-user/05be0203eef3/logs/cif-tools-1.0.12.log Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=140amd64-default-build-as-user&build=05be0203eef3 Log: =>> Building science/cif-tools build started at Sun Sep 22 16:05:27 UTC 2024 port directory: /usr/ports/science/cif-tools package name: cif-tools-1.0.12 building for: FreeBSD 140amd64-default-build-as-user-job-06 14.0-RELEASE-p10 FreeBSD 14.0-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 593 Aug 2 00:05 /usr/ports/science/cif-tools/Makefile Ports top last git commit: 05be0203eef Ports top unclean checkout: no Port dir last git commit: 33765e1df0c Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1400097 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RELEASE-p10 UNAME_r=14.0-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/poudriere/data/.m/140amd64-default-build-as-user/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/poudriere/data/.m/140amd64-default-build-as-user/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/poudriere/data/.m/140amd64-default-build-as-user/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/cif-tools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cif-tools/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cif-tools/work/.cache HOME=/wrkdirs/usr/ports/science/cif-tools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cif-tools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cif-tools/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/cif-tools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cif-tools/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cif-tools/work/.cache HOME=/wrkdirs/usr/ports/science/cif-tools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cif-tools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cif-tools/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cif-tools" EXAMPLESDIR="share/examples/cif-tools" DATADIR="share/cif-tools" WWWDIR="www/cif-tools" ETCDIR="etc/cif-tools" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cif-tools DOCSDIR=/usr/local/share/doc/cif-tools EXAMPLESDIR=/usr/local/share/examples/cif-tools WWWDIR=/usr/local/www/cif-tools ETCDIR=/usr/local/etc/cif-tools --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD2CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cif-tools-1.0.12 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [140amd64-default-build-as-user-job-06] Installing pkg-1.21.3... [140amd64-default-build-as-user-job-06] Extracting pkg-1.21.3: .......... done ===> cif-tools-1.0.12 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cif-tools-1.0.12 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by cif-tools-1.0.12 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by cif-tools-1.0.12 for building => SHA256 Checksum OK for PDB-REDO-cif-tools-v1.0.12_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by cif-tools-1.0.12 for building ===> Extracting for cif-tools-1.0.12 => SHA256 Checksum OK for PDB-REDO-cif-tools-v1.0.12_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for cif-tools-1.0.12 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cif-tools-1.0.12 depends on package: libmcfp>0 - not found ===> Installing existing package /packages/All/libmcfp-1.3.3.pkg [140amd64-default-build-as-user-job-06] Installing libmcfp-1.3.3... [140amd64-default-build-as-user-job-06] Extracting libmcfp-1.3.3: .......... done ===> cif-tools-1.0.12 depends on package: libmcfp>0 - found ===> Returning to build of cif-tools-1.0.12 ===> cif-tools-1.0.12 depends on executable: mrc - not found ===> Installing existing package /packages/All/mrc-1.3.13.pkg [140amd64-default-build-as-user-job-06] Installing mrc-1.3.13... [140amd64-default-build-as-user-job-06] Extracting mrc-1.3.13: ...... done ===> cif-tools-1.0.12 depends on executable: mrc - found ===> Returning to build of cif-tools-1.0.12 ===> cif-tools-1.0.12 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.30.3_1.pkg [140amd64-default-build-as-user-job-06] Installing cmake-core-3.30.3_1... [140amd64-default-build-as-user-job-06] `-- Installing expat-2.6.3... [140amd64-default-build-as-user-job-06] `-- Extracting expat-2.6.3: .......... done [140amd64-default-build-as-user-job-06] `-- Installing jsoncpp-1.9.6_1... [140amd64-default-build-as-user-job-06] `-- Extracting jsoncpp-1.9.6_1: .......... done [140amd64-default-build-as-user-job-06] `-- Installing libuv-1.48.0... [140amd64-default-build-as-user-job-06] `-- Extracting libuv-1.48.0: .......... done [140amd64-default-build-as-user-job-06] `-- Installing rhash-1.4.4_1... [140amd64-default-build-as-user-job-06] | `-- Installing gettext-runtime-0.22.5... [140amd64-default-build-as-user-job-06] | | `-- Installing indexinfo-0.3.1... [140amd64-default-build-as-user-job-06] | | `-- Extracting indexinfo-0.3.1: .... done [140amd64-default-build-as-user-job-06] | `-- Extracting gettext-runtime-0.22.5: .......... done [140amd64-default-build-as-user-job-06] `-- Extracting rhash-1.4.4_1: .......... done [140amd64-default-build-as-user-job-06] Extracting cmake-core-3.30.3_1: .......... done ===> cif-tools-1.0.12 depends on file: /usr/local/bin/cmake - found ===> Returning to build of cif-tools-1.0.12 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cif-tools-1.0.12 depends on shared library: libboost_iostreams.so - not found ===> Installing existing package /packages/All/boost-libs-1.84.0.pkg [140amd64-default-build-as-user-job-06] Installing boost-libs-1.84.0... [140amd64-default-build-as-user-job-06] `-- Installing icu-74.2_1,1... [140amd64-default-build-as-user-job-06] `-- Extracting icu-74.2_1,1: .......... done [140amd64-default-build-as-user-job-06] Extracting boost-libs-1.84.0: .......... done ===== Message from boost-libs-1.84.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> cif-tools-1.0.12 depends on shared library: libboost_iostreams.so - found (/usr/local/lib/libboost_iostreams.so) ===> Returning to build of cif-tools-1.0.12 ===> cif-tools-1.0.12 depends on shared library: libcifpp.so - not found ===> Installing existing package /packages/All/libcifpp-7.0.5.pkg [140amd64-default-build-as-user-job-06] Installing libcifpp-7.0.5... [140amd64-default-build-as-user-job-06] `-- Installing bash-5.2.32... [140amd64-default-build-as-user-job-06] | `-- Installing readline-8.2.13... [140amd64-default-build-as-user-job-06] | `-- Extracting readline-8.2.13: .......... done [140amd64-default-build-as-user-job-06] `-- Extracting bash-5.2.32: .......... done [140amd64-default-build-as-user-job-06] Extracting libcifpp-7.0.5: .......... done ===> cif-tools-1.0.12 depends on shared library: libcifpp.so - found (/usr/local/lib/libcifpp.so) ===> Returning to build of cif-tools-1.0.12 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for cif-tools-1.0.12 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/cif-tools/work/.build -- The CXX compiler identification is Clang 16.0.6 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for C++ include filesystem -- Looking for C++ include filesystem - found -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED - Success -- Git hash not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found ZLIB: /usr/lib/libz.so (found version "1.3") -- Configuring done (6.7s) CMake Error at /usr/local/lib/cmake/cifpp/cifpp-targets.cmake:61 (set_target_properties): The link interface of target "cifpp::cifpp" contains: std::atomic but the target was not found. Possible reasons include: * There is a typo in the target name. * A find_package call is missing for an IMPORTED target. * An ALIAS target is missing. Call Stack (most recent call first): /usr/local/lib/cmake/cifpp/cifpp-config.cmake:27 (include) CMakeLists.txt:100 (find_package) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED CMake Generate step failed. Build files cannot be regenerated correctly. *** Error code 1 Stop. make: stopped in /usr/ports/science/cif-tools