[package - 133i386-default][math/libRmath] Failed for libRmath-4.4.1 in build
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Date: Tue, 03 Sep 2024 10:29:24 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: alster@vinterdalen.se
Log URL: https://pkg-status.freebsd.org/beefy15/data/133i386-default/94b089c7ad30/logs/libRmath-4.4.1.log
Build URL: https://pkg-status.freebsd.org/beefy15/build.html?mastername=133i386-default&build=94b089c7ad30
Log:
=>> Building math/libRmath
build started at Tue Sep 3 10:28:43 UTC 2024
port directory: /usr/ports/math/libRmath
package name: libRmath-4.4.1
building for: FreeBSD 133i386-default-job-07 13.3-RELEASE-p5 FreeBSD 13.3-RELEASE-p5 i386
maintained by: alster@vinterdalen.se
Makefile datestamp: -rw-r--r-- 1 root wheel 1293 Sep 3 01:01 /usr/ports/math/libRmath/Makefile
Ports top last git commit: 94b089c7ad3
Ports top unclean checkout: no
Port dir last git commit: 610b0b17a15
Port dir unclean checkout: no
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> libRmath-4.4.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133i386-default-job-07] Installing pkg-1.21.3...
[133i386-default-job-07] Extracting pkg-1.21.3: .......... done
===> libRmath-4.4.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of libRmath-4.4.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-4.4.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-4.4.1 for building
=> SHA256 Checksum OK for R-4.4.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by libRmath-4.4.1 for building
===> Extracting for libRmath-4.4.1
=> SHA256 Checksum OK for R-4.4.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for libRmath-4.4.1
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> libRmath-4.4.1 depends on executable: gfortran13 - not found
===> Installing existing package /packages/All/gcc13-13.2.0_4.pkg
[133i386-default-job-07] Installing gcc13-13.2.0_4...
[133i386-default-job-07] `-- Installing binutils-2.40_8,1...
[133i386-default-job-07] | `-- Installing indexinfo-0.3.1...
[133i386-default-job-07] | `-- Extracting indexinfo-0.3.1: .... done
[133i386-default-job-07] | `-- Installing zstd-1.5.6...
[133i386-default-job-07] | | `-- Installing liblz4-1.10.0,1...
[133i386-default-job-07] | | `-- Extracting liblz4-1.10.0,1: .......... done
[133i386-default-job-07] | `-- Extracting zstd-1.5.6: .......... done
[133i386-default-job-07] `-- Extracting binutils-2.40_8,1: .......... done
[133i386-default-job-07] `-- Installing gmp-6.3.0...
[133i386-default-job-07] `-- Extracting gmp-6.3.0: .......... done
[133i386-default-job-07] `-- Installing mpc-1.3.1_1...
[133i386-default-job-07] | `-- Installing mpfr-4.2.1,1...
[133i386-default-job-07] | `-- Extracting mpfr-4.2.1,1: .......... done
[133i386-default-job-07] `-- Extracting mpc-1.3.1_1: ......... done
[133i386-default-job-07] Extracting gcc13-13.2.0_4: .......... done
=====
Message from gcc13-13.2.0_4:
--
<snip>
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using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
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config.status: executing libtool commands
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configure: WARNING: --with-libdeflate-compression requires libdeflate
R is now configured for i386-portbld-freebsd13.3
Source directory: .
Installation directory: /usr/local
C compiler: cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing
Fortran fixed-form compiler: gfortran13 -O -Wl,-rpath=/usr/local/lib/gcc13
Default C++ compiler: c++ -std=gnu++17 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++11 compiler: c++ -std=gnu++11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++14 compiler: c++ -std=gnu++14 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++17 compiler: c++ -std=gnu++17 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++20 compiler: c++ -std=gnu++20 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
C++23 compiler: c++ -std=gnu++23 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include
Fortran free-form compiler: gfortran13 -Wl,-rpath=/usr/local/lib/gcc13
Obj-C compiler: cc -g -O2 -fobjc-exceptions
Interfaces supported:
External libraries: pcre2, curl
Additional capabilities:
Options enabled: shared BLAS, R profiling
Capabilities skipped: PNG, JPEG, TIFF, NLS, cairo, ICU
Options not enabled: memory profiling
Recommended packages: yes
configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages
configure: WARNING: I could not determine a browser
configure: WARNING: I could not determine a PDF viewer
configure: WARNING: 32-bit build -- this is little tested
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for libRmath-4.4.1
--- ../../include/Rconfig.h ---
--- Copy ---
--- inc ---
--- ../../include/Rconfig.h ---
(cd ../../include; /usr/bin/make Rconfig.h)
--- Rconfig.h ---
Copying source files
--- inc ---
(cd ../../include; /usr/bin/make Rmath.h)
--- Makedeps ---
--- mlutils.d ---
--- d1mach.d ---
making mlutils.d from mlutils.c
--- inc ---
--- Rmath.h ---
--- Makedeps ---
--- mlutils.d ---
In file included from mlutils.c:24:
./../nmath.h:44:10: fatal error: 'Rmath.h' file not found
44 | #include <Rmath.h>
| ^~~~~~~~~
1 error generated.
*** [mlutils.d] Error code 1
make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.4.1/src/nmath/standalone
making d1mach.d from d1mach.c
--- inc ---
*** [inc] Error code 6
make: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.4.1/src/nmath/standalone
--- Makedeps ---
1 error
make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.4.1/src/nmath/standalone
*** [Makedeps] Error code 2
make: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.4.1/src/nmath/standalone
2 errors
make: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.4.1/src/nmath/standalone
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/libRmath