[package - main-arm64-default][science/py-hoomd-blue] Failed for py311-hoomd-blue-4.8.2 in build
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Date: Thu, 31 Oct 2024 22:50:14 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-arm64-default/p711a2f7f1ca4_s0d965bc0342/logs/py311-hoomd-blue-4.8.2.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-arm64-default&build=p711a2f7f1ca4_s0d965bc0342
Log:
=>> Building science/py-hoomd-blue
build started at Thu Oct 31 22:49:06 UTC 2024
port directory: /usr/ports/science/py-hoomd-blue
package name: py311-hoomd-blue-4.8.2
building for: FreeBSD main-arm64-default-job-11 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 arm64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 2189 Aug 11 01:02 /usr/ports/science/py-hoomd-blue/Makefile
Ports top last git commit: 711a2f7f1ca
Ports top unclean checkout: no
Port dir last git commit: 532c0825225
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500026
Job Id: 11
!!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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PORT_FLAGS=
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---Begin OPTIONS List---
===> The following configuration options are available for py311-hoomd-blue-4.8.2:
TBB=on: Enable support for Threading Building Blocks (TBB)
====> MPI (Message Passing Interface) support: you have to select exactly one of them
NOMPI=off: Build without parallel processing support
MPICH=on: Parallel processing support via MPICH
OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.cache HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.cache HOME=/wrkdirs/usr/ports/science/py-hoomd-blue/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-hoomd-blue/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/py-hoomd-blue/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lexecinfo -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMPI="@comment " NO_OPENMPI="" TBB="" NO_TBB="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/hoomd-blue" EXAMPLESDIR="share/examples/hoomd-blue" DATADIR="share/hoomd-blue" WWWDIR="www/hoomd-blue" ETCDIR="etc/hoomd-blue"
--End PLIST_SUB--
--SUB_LIST--
MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMPI="@comment " NO_OPENMPI="" TBB="" NO_TBB="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hoomd-blue DOCSDIR=/usr/local/share/doc/hoomd-blue EXAMPLESDIR=/usr/local/share/examples/hoomd-blue WWWDIR=/usr/local/www/hoomd-blue ETCDIR=/usr/local/etc/hoomd-blue
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
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MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 1048576
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
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pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-hoomd-blue-4.8.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-arm64-default-job-11] Installing pkg-1.21.3...
[main-arm64-default-job-11] Extracting pkg-1.21.3: .......... done
===> py311-hoomd-blue-4.8.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-hoomd-blue-4.8.2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-hoomd-blue-4.8.2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-hoomd-blue-4.8.2 for building
=> SHA256 Checksum OK for glotzerlab-hoomd-blue-v4.8.2_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-upp11-0c1fb8d_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-quickhull-1ffbc6f_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-random123-a2c4f04_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-HIP-d211f99_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-hipCUB-c70e193_GH0.tar.gz.
=> SHA256 Checksum OK for mphowardlab-neighbor-ba0f068_GH0.tar.gz.
=> SHA256 Checksum OK for mphowardlab-hipper-b6da049_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-hoomd-blue-4.8.2 for building
===> Extracting for py311-hoomd-blue-4.8.2
=> SHA256 Checksum OK for glotzerlab-hoomd-blue-v4.8.2_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-upp11-0c1fb8d_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-quickhull-1ffbc6f_GH0.tar.gz.
=> SHA256 Checksum OK for glotzerlab-random123-a2c4f04_GH0.tar.gz.
<snip>
===> py311-hoomd-blue-4.8.2 depends on file: /usr/local/bin/cmake - found
===> Returning to build of py311-hoomd-blue-4.8.2
===> py311-hoomd-blue-4.8.2 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,4.pkg
[main-arm64-default-job-11] Installing ninja-1.11.1,4...
[main-arm64-default-job-11] `-- Installing python311-3.11.10...
[main-arm64-default-job-11] | `-- Installing libffi-3.4.6...
[main-arm64-default-job-11] | `-- Extracting libffi-3.4.6: .......... done
[main-arm64-default-job-11] | `-- Installing mpdecimal-4.0.0...
[main-arm64-default-job-11] | `-- Extracting mpdecimal-4.0.0: .......... done
[main-arm64-default-job-11] | `-- Installing readline-8.2.13_2...
[main-arm64-default-job-11] | `-- Extracting readline-8.2.13_2: .......... done
[main-arm64-default-job-11] `-- Extracting python311-3.11.10: .......... done
[main-arm64-default-job-11] Extracting ninja-1.11.1,4: ........ done
=====
Message from python311-3.11.10:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> py311-hoomd-blue-4.8.2 depends on executable: ninja - found
===> Returning to build of py311-hoomd-blue-4.8.2
===> py311-hoomd-blue-4.8.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found
===> Installing existing package /packages/All/eigen-3.4.0_3.pkg
[main-arm64-default-job-11] Installing eigen-3.4.0_3...
[main-arm64-default-job-11] `-- Installing blas-3.12.0_1...
[main-arm64-default-job-11] | `-- Installing gcc13-13.3.0...
[main-arm64-default-job-11] | | `-- Installing binutils-2.43.1,1...
[main-arm64-default-job-11] | | `-- Installing zstd-1.5.6...
[main-arm64-default-job-11] | | | `-- Installing liblz4-1.10.0,1...
[main-arm64-default-job-11] | | | `-- Extracting liblz4-1.10.0,1: .......... done
[main-arm64-default-job-11] | | `-- Extracting zstd-1.5.6: .......... done
[main-arm64-default-job-11] | | `-- Extracting binutils-2.43.1,1: .......... done
[main-arm64-default-job-11] | | `-- Installing gmp-6.3.0...
[main-arm64-default-job-11] | | `-- Extracting gmp-6.3.0: .......... done
[main-arm64-default-job-11] | | `-- Installing mpc-1.3.1_1...
[main-arm64-default-job-11] | | `-- Installing mpfr-4.2.1,1...
[main-arm64-default-job-11] | | `-- Extracting mpfr-4.2.1,1: .......... done
[main-arm64-default-job-11] | | `-- Extracting mpc-1.3.1_1: ......... done
[main-arm64-default-job-11] | `-- Extracting gcc13-13.3.0: .......... done
[main-arm64-default-job-11] `-- Extracting blas-3.12.0_1: ........ done
[main-arm64-default-job-11] `-- Installing lapack-3.12.0_2...
[main-arm64-default-job-11] `-- Extracting lapack-3.12.0_2: .......... done
[main-arm64-default-job-11] Extracting eigen-3.4.0_3: .......... done
=====
Message from gcc13-13.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> py311-hoomd-blue-4.8.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===> Returning to build of py311-hoomd-blue-4.8.2
===> py311-hoomd-blue-4.8.2 depends on file: /usr/local/bin/python3.11 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-hoomd-blue-4.8.2 depends on shared library: libtbb.so - not found
===> Installing existing package /packages/All/onetbb-2021.13.0.pkg
[main-arm64-default-job-11] Installing onetbb-2021.13.0...
[main-arm64-default-job-11] `-- Installing hwloc2-2.11.2...
[main-arm64-default-job-11] | `-- Installing level-zero-1.17.45...
[main-arm64-default-job-11] | | `-- Installing libfmt-10.2.1...
[main-arm64-default-job-11] | | `-- Extracting libfmt-10.2.1: .......... done
[main-arm64-default-job-11] | | `-- Installing spdlog-1.14.1...
[main-arm64-default-job-11] | | `-- Extracting spdlog-1.14.1: .......... done
[main-arm64-default-job-11] | `-- Extracting level-zero-1.17.45: .......... done
[main-arm64-default-job-11] | `-- Installing libpciaccess-0.18.1...
[main-arm64-default-job-11] | `-- Extracting libpciaccess-0.18.1: ........ done
[main-arm64-default-job-11] | `-- Installing libxml2-2.11.9...
[main-arm64-default-job-11] | `-- Extracting libxml2-2.11.9: .......... done
[main-arm64-default-job-11] `-- Extracting hwloc2-2.11.2: .......... done
[main-arm64-default-job-11] Extracting onetbb-2021.13.0: .......... done
===> py311-hoomd-blue-4.8.2 depends on shared library: libtbb.so - found (/usr/local/lib/libtbb.so)
===> Returning to build of py311-hoomd-blue-4.8.2
===> py311-hoomd-blue-4.8.2 depends on shared library: libmpich.so - not found
===> Installing existing package /packages/All/mpich-4.2.3.pkg
[main-arm64-default-job-11] Installing mpich-4.2.3...
[main-arm64-default-job-11] `-- Installing json-c-0.18...
[main-arm64-default-job-11] `-- Extracting json-c-0.18: .......... done
[main-arm64-default-job-11] `-- Installing libepoll-shim-0.0.20240608...
[main-arm64-default-job-11] `-- Extracting libepoll-shim-0.0.20240608: .......... done
[main-arm64-default-job-11] `-- Installing libfabric-1.15.1_2...
[main-arm64-default-job-11] `-- Extracting libfabric-1.15.1_2: .......... done
[main-arm64-default-job-11] `-- Installing perl5-5.36.3_2...
[main-arm64-default-job-11] `-- Extracting perl5-5.36.3_2: .......... done
[main-arm64-default-job-11] Extracting mpich-4.2.3: .......... done
===> py311-hoomd-blue-4.8.2 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===> Returning to build of py311-hoomd-blue-4.8.2
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-hoomd-blue-4.8.2
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/py-hoomd-blue/work/.build
-- The C compiler identification is Clang 19.1.2
-- The CXX compiler identification is Clang 19.1.2
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring HOOMD 4.8.2
-- Found MPI_C: /usr/local/lib/libmpi.so (found version "4.1")
-- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "4.1")
-- Found MPI: TRUE (found version "4.1")
-- Found cereal: /usr/local/lib/cmake/cereal
-- Found Python: /usr/local/bin/python3.11 (found version "3.11.10") found components: Interpreter Development Development.Module Development.Embed
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Found pybind11: /usr/local/include (found version "2.13.6")
-- Found pybind11: /usr/local/share/cmake/pybind11 /usr/local/include (version 2.13.6)
-- Installing hoomd python module to: /usr/local/lib/python3.11/site-packages/hoomd
-- Found eigen: /usr/local/share/eigen3/cmake /usr/local/include/eigen3 (version 3.4.0)
-- Found TBB: /usr/local/lib/cmake/TBB /usr/local/lib/libtbb.so.12.13 /usr/local/include
-- Found plugin: example_plugins/pair_plugin
-- Found plugin: example_plugins/updater_plugin
-- Found plugin: example_plugins/shape_plugin
-- Configuring done (6.4s)
-- Generating done (0.4s)
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CMAKE_COLOR_MAKEFILE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
Python3_EXECUTABLE
Python_ADDITIONAL_VERSIONS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/science/py-hoomd-blue/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py311-hoomd-blue-4.8.2
[ 0% 3/539] /usr/bin/c++ -DBUILD_MPCD -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.11 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/Action.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/Action.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/Action.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-
blue-4.8.2/hoomd/Action.cc
FAILED: hoomd/CMakeFiles/_hoomd.dir/Action.cc.o
/usr/bin/c++ -DBUILD_MPCD -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.11 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/Action.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/Action.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/Action.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/ho
omd/Action.cc
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/Action.cc:4:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/Action.h:15:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/SharedSignal.h:7:
/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/extern/nano-signal-slot/nano_signal_slot.hpp:46:45: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw]
46 | Observer::insert(Delegate::template bind (instance), this);
| ^
/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/extern/nano-signal-slot/nano_signal_slot.hpp:87:45: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw]
87 | Observer::remove(Delegate::template bind (instance), this);
| ^
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/Action.cc:4:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/Action.h:16:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/SystemDefinition.h:15:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/mpcd/ParticleData.h:31:
/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/GPUFlags.h:160:27: error: reference to non-static member function must be called
160 | this->resetFlags(from.readFlags);
| ~~~~~^~~~~~~~~
3 errors generated.
[ 0% 3/539] /usr/bin/c++ -DBUILD_MPCD -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.11 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/Autotuned.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/Autotuned.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/Autotuned.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/wo
rk/hoomd-blue-4.8.2/hoomd/Autotuned.cc
[ 0% 3/539] /usr/bin/c++ -DBUILD_MPCD -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.11 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/module.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/module.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/module.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-
blue-4.8.2/hoomd/module.cc
FAILED: hoomd/CMakeFiles/_hoomd.dir/module.cc.o
/usr/bin/c++ -DBUILD_MPCD -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2 -I/wrkdirs/usr/ports/science/py-hoomd-blue/work/.build/hoomd/include -isystem /usr/local/include/python3.11 -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fcolor-diagnostics -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -fsized-deallocation -MD -MT hoomd/CMakeFiles/_hoomd.dir/module.cc.o -MF hoomd/CMakeFiles/_hoomd.dir/module.cc.o.d -o hoomd/CMakeFiles/_hoomd.dir/module.cc.o -c /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/ho
omd/module.cc
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/module.cc:4:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/Action.h:15:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/SharedSignal.h:7:
/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/extern/nano-signal-slot/nano_signal_slot.hpp:46:45: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw]
46 | Observer::insert(Delegate::template bind (instance), this);
| ^
/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/extern/nano-signal-slot/nano_signal_slot.hpp:87:45: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw]
87 | Observer::remove(Delegate::template bind (instance), this);
| ^
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/module.cc:4:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/Action.h:16:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/SystemDefinition.h:15:
In file included from /wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/mpcd/ParticleData.h:31:
/wrkdirs/usr/ports/science/py-hoomd-blue/work/hoomd-blue-4.8.2/hoomd/GPUFlags.h:160:27: error: reference to non-static member function must be called
160 | this->resetFlags(from.readFlags);
| ~~~~~^~~~~~~~~
3 errors generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/science/py-hoomd-blue