[package - main-arm64-default][science/cardioid] Failed for cardioid-g20211026_3 in build
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Date: Thu, 31 Oct 2024 14:18:46 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-arm64-default/p711a2f7f1ca4_s0d965bc0342/logs/cardioid-g20211026_3.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-arm64-default&build=p711a2f7f1ca4_s0d965bc0342
Log:
=>> Building science/cardioid
build started at Thu Oct 31 14:16:07 UTC 2024
port directory: /usr/ports/science/cardioid
package name: cardioid-g20211026_3
building for: FreeBSD main-arm64-default-job-05 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 arm64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1391 Aug 11 01:02 /usr/ports/science/cardioid/Makefile
Ports top last git commit: 711a2f7f1ca
Ports top unclean checkout: no
Port dir last git commit: b77eb5a4a11
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500026
Job Id: 05
!!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500026
UNAME_v=FreeBSD 15.0-CURRENT 1500026
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
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LANG=C.UTF-8
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LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
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POUDRIERE_PKGNAME=poudriere-git-3.4.2
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for cardioid-g20211026_3:
MFEM=off: Build with MFEM mesh library
OPENMP=on: Parallel processing support via OpenMP
====> MPI (Message Passing Interface) support: you have to select exactly one of them
NOMPI=off: Build without parallel processing support
MPICH=on: Parallel processing support via MPICH
OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cardioid/work/.cache HOME=/wrkdirs/usr/ports/science/cardioid/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cardioid/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cardioid/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cardioid/work/.cache HOME=/wrkdirs/usr/ports/science/cardioid/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cardioid/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cardioid/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/cardioid/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install
-s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
MFEM="@comment " NO_MFEM="" MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cardioid" EXAMPLESDIR="share/examples/cardioid" DATADIR="share/cardioid" WWWDIR="www/cardioid" ETCDIR="etc/cardioid"
--End PLIST_SUB--
--SUB_LIST--
MFEM="@comment " NO_MFEM="" MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cardioid DOCSDIR=/usr/local/share/doc/cardioid EXAMPLESDIR=/usr/local/share/examples/cardioid WWWDIR=/usr/local/www/cardioid ETCDIR=/usr/local/etc/cardioid
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 1048576
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cardioid-g20211026_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-arm64-default-job-05] Installing pkg-1.21.3...
[main-arm64-default-job-05] Extracting pkg-1.21.3: .......... done
===> cardioid-g20211026_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cardioid-g20211026_3
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by cardioid-g20211026_3 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by cardioid-g20211026_3 for building
=> SHA256 Checksum OK for LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz.
=> SHA256 Checksum OK for mfem-mfem-v4.4_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by cardioid-g20211026_3 for building
===> Extracting for cardioid-g20211026_3
=> SHA256 Checksum OK for LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz.
=> SHA256 Checksum OK for mfem-mfem-v4.4_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for cardioid-g20211026_3
===> Applying FreeBSD patches for cardioid-g20211026_3 from /usr/ports/science/cardioid/files
===========================================================================
<snip>
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:447:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
447 | DoubleInt maxLoc[nTimers];
| ^~~~~~~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:447:21: note: read of non-const variable 'nTimers' is not allowed in a constant expression
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:423:13: note: declared here
423 | unsigned nTimers = outputOrder.size();
| ^
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:448:17: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
448 | double sigma[nTimers];
| ^~~~~~~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:448:17: note: read of non-const variable 'nTimers' is not allowed in a constant expression
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:423:13: note: declared here
423 | unsigned nTimers = outputOrder.size();
| ^
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:470:27: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
470 | long double recvBuf[bufSize];
| ^~~~~~~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:470:27: note: read of non-const variable 'bufSize' is not allowed in a constant expression
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:438:13: note: declared here
438 | unsigned bufSize = 2*nTimers;
| ^
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:489:34: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
489 | DoubleInt minLocSendBuf[nTimers];
| ^~~~~~~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:489:34: note: read of non-const variable 'nTimers' is not allowed in a constant expression
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:423:13: note: declared here
423 | unsigned nTimers = outputOrder.size();
| ^
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:490:34: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
490 | DoubleInt maxLocSendBuf[nTimers];
| ^~~~~~~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:490:34: note: read of non-const variable 'nTimers' is not allowed in a constant expression
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:423:13: note: declared here
423 | unsigned nTimers = outputOrder.size();
| ^
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:491:30: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
491 | double sigmaSendBuf[nTimers];
| ^~~~~~~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:491:30: note: read of non-const variable 'nTimers' is not allowed in a constant expression
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/PerformanceTimers.cc:423:13: note: declared here
423 | unsigned nTimers = outputOrder.size();
| ^
12 warnings generated.
[ 25% 32/116] /usr/bin/cc -DHAVE_LAPACK -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o -MF elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o.d -o elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:2:
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/portableSIMD.h:68:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
68 | }
| ^
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:311:7: warning: expression result unused [-Wunused-value]
311 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:507:7: warning: expression result unused [-Wunused-value]
507 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:678:7: warning: expression result unused [-Wunused-value]
678 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:812:7: warning: expression result unused [-Wunused-value]
812 | for (ii;ii<TTROUND(nCells,16);ii+=16)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1046:7: warning: expression result unused [-Wunused-value]
1046 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1145:7: warning: expression result unused [-Wunused-value]
1145 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1354:7: warning: expression result unused [-Wunused-value]
1354 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1563:7: warning: expression result unused [-Wunused-value]
1563 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1621:7: warning: expression result unused [-Wunused-value]
1621 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1667:7: warning: expression result unused [-Wunused-value]
1667 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1833:7: warning: expression result unused [-Wunused-value]
1833 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:1980:7: warning: expression result unused [-Wunused-value]
1980 | for (ii;ii<TTROUND(nCells,16);ii+=16)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:2147:7: warning: expression result unused [-Wunused-value]
2147 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:2239:7: warning: expression result unused [-Wunused-value]
2239 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:2424:7: warning: expression result unused [-Wunused-value]
2424 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:2580:7: warning: expression result unused [-Wunused-value]
2580 | for (ii;ii<TTROUND(nCells,12);ii+=12)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:2771:7: warning: expression result unused [-Wunused-value]
2771 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:2880:7: warning: expression result unused [-Wunused-value]
2880 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:3094:7: warning: expression result unused [-Wunused-value]
3094 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:3295:7: warning: expression result unused [-Wunused-value]
3295 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:3359:7: warning: expression result unused [-Wunused-value]
3359 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:3409:7: warning: expression result unused [-Wunused-value]
3409 | for (ii;ii<TTROUND(nCells,8);ii+=8)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:3583:7: warning: expression result unused [-Wunused-value]
3583 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:3728:7: warning: expression result unused [-Wunused-value]
3728 | for (ii;ii<TTROUND(nCells,16);ii+=16)
| ^~
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06GatesSimd.c:3959:7: warning: expression result unused [-Wunused-value]
3959 | for (ii;ii<TTROUND(nCells,4);ii+=4)
| ^~
26 warnings generated.
[ 26% 33/116] : && /usr/local/bin/cmake -E rm -f lib/libprofiling.a && /usr/bin/llvm-ar qc lib/libprofiling.a elec/CMakeFiles/profiling.dir/PerformanceTimers.cc.o elec/CMakeFiles/profiling.dir/unionOfStrings.cc.o && /usr/bin/llvm-ranlib lib/libprofiling.a && :
[ 27% 34/116] /usr/bin/cc -DHAVE_LAPACK -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o -MF elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o.d -o elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06Gates.c
[ 28% 35/116] /usr/bin/cc -DHAVE_LAPACK -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o -MF elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o.d -o elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06NonGates.c
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06NonGates.c:249:10: warning: passing arguments to 'set_SP' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
249 | set_SP(cnst);
| ^
1 warning generated.
[ 29% 36/116] /usr/bin/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/heart_cpu_only.dir/spi_impl.c.o -MF elec/CMakeFiles/heart_cpu_only.dir/spi_impl.c.o.d -o elec/CMakeFiles/heart_cpu_only.dir/spi_impl.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/spi_impl.c
[ 30% 37/116] /usr/bin/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/heart_cpu_only.dir/clooper.c.o -MF elec/CMakeFiles/heart_cpu_only.dir/clooper.c.o.d -o elec/CMakeFiles/heart_cpu_only.dir/clooper.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/clooper.c
[ 31% 38/116] /usr/bin/cc -DHAVE_LAPACK -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/svd.c.o -MF elec/CMakeFiles/ode_cpu_only.dir/svd.c.o.d -o elec/CMakeFiles/ode_cpu_only.dir/svd.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/svd.c
[ 31% 38/116] /usr/bin/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/heart_cpu_only.dir/workBound.c.o -MF elec/CMakeFiles/heart_cpu_only.dir/workBound.c.o.d -o elec/CMakeFiles/heart_cpu_only.dir/workBound.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/workBound.c
[ 32% 39/116] : && /usr/local/bin/cmake -E rm -f lib/libheart_cpu_only.a && /usr/bin/llvm-ar qc lib/libheart_cpu_only.a elec/CMakeFiles/heart_cpu_only.dir/spi_impl.c.o elec/CMakeFiles/heart_cpu_only.dir/clooper.c.o elec/CMakeFiles/heart_cpu_only.dir/workBound.c.o && /usr/bin/llvm-ranlib lib/libheart_cpu_only.a && :
[ 33% 39/116] /usr/bin/cc -DHAVE_LAPACK -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o -MF elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o.d -o elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06NonGatesSimd.c
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06NonGatesSimd.c:2:
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/portableSIMD.h:68:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
68 | }
| ^
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06NonGatesSimd.c:4:
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06NonGates.h:22:6: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C23, conflicting with a subsequent definition [-Wdeprecated-non-prototype]
22 | void set_SP();
| ^
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/TT06NonGatesSimd.c:25:6: note: conflicting prototype is here
25 | void set_SP(struct nonGateCnst cnst)
| ^
2 warnings generated.
[ 34% 40/116] : && /usr/local/bin/cmake -E rm -f lib/libode_cpu_only.a && /usr/bin/llvm-ar qc lib/libode_cpu_only.a elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o elec/CMakeFiles/ode_cpu_only.dir/svd.c.o && /usr/bin/llvm-ranlib lib/libode_cpu_only.a && :
[ 35% 41/116] cd /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec && /usr/local/bin/perl registerBuiltinReactions.pl /wrkdirs/usr/ports/science/cardioid/work/.build/elec/registerBuiltinReactions.cc Passive.cc BetterTT06.cc
[ 36% 44/116] /usr/bin/c++ -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_gpu_aware.dir/Passive.cc.o -MF elec/CMakeFiles/ode_gpu_aware.dir/Passive.cc.o.d -o elec/CMakeFiles/ode_gpu_aware.dir/Passive.cc.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Passive.cc
FAILED: elec/CMakeFiles/ode_gpu_aware.dir/Passive.cc.o
/usr/bin/c++ -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_gpu_aware.dir/Passive.cc.o -MF elec/CMakeFiles/ode_gpu_aware.dir/Passive.cc.o.d -o elec/CMakeFiles/ode_gpu_aware.dir/Passive.cc.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Passive.cc
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Passive.cc:14:
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Passive.hh:1:
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Reaction.hh:6:
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/lazy_array.hh:254:51: error: no member named 'pointerRecords' in 'lazy_array<TTT>'; did you mean 'pointerRecord_'?
254 | swap(first.pointerRecord_[ispace],second.pointerRecords[ispace]);
| ^~~~~~~~~~~~~~
| pointerRecord_
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/lazy_array.hh:367:9: note: 'pointerRecord_' declared here
367 | TTT* pointerRecord_[NUMSPACES];
| ^
1 error generated.
[ 37% 44/116] /usr/bin/c++ -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_gpu_aware.dir/Reaction.cc.o -MF elec/CMakeFiles/ode_gpu_aware.dir/Reaction.cc.o.d -o elec/CMakeFiles/ode_gpu_aware.dir/Reaction.cc.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Reaction.cc
FAILED: elec/CMakeFiles/ode_gpu_aware.dir/Reaction.cc.o
/usr/bin/c++ -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_gpu_aware.dir/Reaction.cc.o -MF elec/CMakeFiles/ode_gpu_aware.dir/Reaction.cc.o.d -o elec/CMakeFiles/ode_gpu_aware.dir/Reaction.cc.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Reaction.cc
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Reaction.cc:1:
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Reaction.hh:6:
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/lazy_array.hh:254:51: error: no member named 'pointerRecords' in 'lazy_array<TTT>'; did you mean 'pointerRecord_'?
254 | swap(first.pointerRecord_[ispace],second.pointerRecords[ispace]);
| ^~~~~~~~~~~~~~
| pointerRecord_
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/lazy_array.hh:367:9: note: 'pointerRecord_' declared here
367 | TTT* pointerRecord_[NUMSPACES];
| ^
1 error generated.
[ 37% 44/116] /usr/bin/c++ -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_gpu_aware.dir/BetterTT06.cc.o -MF elec/CMakeFiles/ode_gpu_aware.dir/BetterTT06.cc.o.d -o elec/CMakeFiles/ode_gpu_aware.dir/BetterTT06.cc.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/BetterTT06.cc
FAILED: elec/CMakeFiles/ode_gpu_aware.dir/BetterTT06.cc.o
/usr/bin/c++ -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simUtil/src/../include -I/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/simdops/include -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc13 -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp=libomp -MD -MT elec/CMakeFiles/ode_gpu_aware.dir/BetterTT06.cc.o -MF elec/CMakeFiles/ode_gpu_aware.dir/BetterTT06.cc.o.d -o elec/CMakeFiles/ode_gpu_aware.dir/BetterTT06.cc.o -c /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/BetterTT06.cc
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/BetterTT06.cc:14:
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/BetterTT06.hh:1:
In file included from /wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/Reaction.hh:6:
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/lazy_array.hh:254:51: error: no member named 'pointerRecords' in 'lazy_array<TTT>'; did you mean 'pointerRecord_'?
254 | swap(first.pointerRecord_[ispace],second.pointerRecords[ispace]);
| ^~~~~~~~~~~~~~
| pointerRecord_
/wrkdirs/usr/ports/science/cardioid/work/cardioid-2f66d9f/elec/lazy_array.hh:367:9: note: 'pointerRecord_' declared here
367 | TTT* pointerRecord_[NUMSPACES];
| ^
1 error generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/science/cardioid