From nobody Thu Oct 17 12:43:24 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4XTnZ43Vlyz5Yy2m for ; Thu, 17 Oct 2024 12:43:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4XTnZ41fQHz4fgn for ; Thu, 17 Oct 2024 12:43:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1729169004; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=Yf/IILFkssFUaZQG+mjQKc+O0ArZZSn8pmbp7qpHh28=; b=Cf7srRsEsWVawt21ziiTKM9sG1Uq7CWpRTl/cTa6lN8XpujhNGtIDMdJRqmXeCHDyPMmHi m0CGIqtyKbPlkVdAFo3ytrbZxm81bRfgBusBzD539gsVyBRdUY437x+jpbfv3ugtV02TBb kow41nNlJsewsL5EdrE/xpD7KvxsrQoQqNGpJUtOlwojJe+XA2rtdcaATxvmdzsmFE9Y8P 9zZIyNPgdRwrypEP2FZLVfZm4tIFzZMfyEdJbnYGLy67hzwJ3NpUU10hH154c554OtFfMl GBjS5e85zkmM0CHbSJiFioV/3Wei+8DSEDzwC4nVoVuTLDvpIUbUPJgOkHbXXQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1729169004; a=rsa-sha256; cv=none; b=RN3abzz05EgcKhNDiRsYJ6q48/yFQNsQ48eSJfmX4BTZpsH/r67QDM3PjQz7duWoMW0bDN izLrB9XvFfu4yleVBVGQM1f/jgZNVZeluxkVJLuTRczzM/Yasc2NE1H2PMPk4nJcYrrV// uGmv5+8iyLpvJR/Qww6MtReLs1YTBQl72bkj5W8W/wM+e5B4IllnynZwtGfNz0xY7GI3cp myJiPkxF2Qa1MENYNpcwDstmDAWbik0S216aWJjUkls4NYVIktCYBUATXxZ08Bx7UueEdS XHdlGBYyz36T/G6HZLFMG+8hMwlx5sMpWK8ddOlkgUQvj+W/PYhzA9bKRl5Jrw== Received: from ampere3.nyi.freebsd.org (ampere3.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:26]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4XTnZ40vG2zqBJ for ; Thu, 17 Oct 2024 12:43:24 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 29f8 by ampere3.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere3.nyi.freebsd.org); Thu, 17 Oct 2024 12:43:24 +0000 To: yuri@FreeBSD.org Subject: [package - 133arm64-default][biology/coverm] Failed for coverm-0.7.0 in build Cc: pkg-fallout@FreeBSD.org Date: Thu, 17 Oct 2024 12:43:24 +0000 Message-Id: <6711066c.29f8.2ee5ae5e@ampere3.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere3/data/133arm64-default/f06faad6cb80/logs/coverm-0.7.0.log Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=133arm64-default&build=f06faad6cb80 Log: =>> Building biology/coverm build started at Thu Oct 17 12:37:05 UTC 2024 port directory: /usr/ports/biology/coverm package name: coverm-0.7.0 building for: FreeBSD 133arm64-default-job-02 13.3-RELEASE-p7 FreeBSD 13.3-RELEASE-p7 arm64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 5708 Oct 13 01:01 /usr/ports/biology/coverm/Makefile Ports top last git commit: f06faad6cb8 Ports top unclean checkout: no Port dir last git commit: 293343cc113 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1303001 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1303001 UNAME_v=FreeBSD 13.3-RELEASE-p7 UNAME_r=13.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/133arm64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/133arm64-default/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=133arm64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/133arm64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/coverm/work/.cache HOME=/wrkdirs/usr/ports/biology/coverm/work TMPDIR="/wrkdirs/usr/ports/biology/coverm/work" PATH=/wrkdirs/usr/ports/biology/coverm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/coverm/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/coverm/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/coverm/work/.cache HOME=/wrkdirs/usr/ports/biology/coverm/work TMPDIR="/wrkdirs/usr/ports/biology/coverm/work" PATH=/wrkdirs/usr/ports/biology/coverm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/coverm/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTA LL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/coverm" EXAMPLESDIR="share/examples/coverm" DATADIR="share/coverm" WWWDIR="www/coverm" ETCDIR="etc/coverm" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/coverm DOCSDIR=/usr/local/share/doc/coverm EXAMPLESDIR=/usr/local/share/examples/coverm WWWDIR=/usr/local/www/coverm ETCDIR=/usr/local/etc/coverm --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License AGPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> coverm-0.7.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [133arm64-default-job-02] Installing pkg-1.21.3... [133arm64-default-job-02] Extracting pkg-1.21.3: .......... done ===> coverm-0.7.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of coverm-0.7.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License AGPLv3 accepted by the user => rust/crates/assert_cli-0.6.3.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/assert_cli/0.6.3/download?dummy=/rust/crates/assert_cli-0.6.3.crate rust/crates/assert_cli-0.6.3.crate 18 kB 63 MBps 00s => rust/crates/bio-types-1.0.4.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/bio-types/1.0.4/download?dummy=/rust/crates/bio-types-1.0.4.crate rust/crates/bio-types-1.0.4.crate 23 kB 63 MBps 00s => rust/crates/bird_tool_utils-0.5.1.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/bird_tool_utils/0.5.1/download?dummy=/rust/crates/bird_tool_utils-0.5.1.crate rust/crates/bird_tool_utils-0.5.1.crate 6743 B 33 MBps 00s => rust/crates/bird_tool_utils-man-0.4.0.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/bird_tool_utils-man/0.4.0/download?dummy=/rust/crates/bird_tool_utils-man-0.4.0.crate rust/crates/bird_tool_utils-man-0.4.0.crate 16 kB 60 MBps 00s => rust/crates/bit-vec-0.5.1.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/bit-vec/0.5.1/download?dummy=/rust/crates/bit-vec-0.5.1.crate rust/crates/bit-vec-0.5.1.crate 18 kB 51 MBps 00s => rust/crates/buffer-redux-1.0.2.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/buffer-redux/1.0.2/download?dummy=/rust/crates/buffer-redux-1.0.2.crate rust/crates/buffer-redux-1.0.2.crate 25 kB 37 MBps 00s => rust/crates/checkm-0.2.0.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/checkm/0.2.0/download?dummy=/rust/crates/checkm-0.2.0.crate rust/crates/checkm-0.2.0.crate 17 kB 46 MBps 00s => rust/crates/disjoint-0.8.0.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/disjoint/0.8.0/download?dummy=/rust/crates/disjoint-0.8.0.crate rust/crates/disjoint-0.8.0.crate 17 kB 51 MBps 00s => rust/crates/environment-0.1.1.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/environment/0.1.1/download?dummy=/rust/crates/environment-0.1.1.crate rust/crates/environment-0.1.1.crate 3227 B 16 MBps 00s => rust/crates/finch-0.6.0.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/finch/0.6.0/download?dummy=/rust/crates/finch-0.6.0.crate rust/crates/finch-0.6.0.crate 39 kB 73 MBps 00s => rust/crates/fs-utils-1.1.4.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/fs-utils/1.1.4/download?dummy=/rust/crates/fs-utils-1.1.4.crate rust/crates/fs-utils-1.1.4.crate 3353 B 17 MBps 00s => rust/crates/galah-0.4.2.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/galah/0.4.2/download?dummy=/rust/crates/galah-0.4.2.crate rust/crates/galah-0.4.2.crate 828 kB 2223 kBps 01s => rust/crates/gbdt-0.1.3.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/gbdt/0.1.3/download?dummy=/rust/crates/gbdt-0.1.3.crate rust/crates/gbdt-0.1.3.crate 38 kB 524 kBps 00s => rust/crates/gcollections-1.5.0.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/gcollections/1.5.0/download?dummy=/rust/crates/gcollections-1.5.0.crate rust/crates/gcollections-1.5.0.crate 16 kB 57 MBps 00s => rust/crates/hts-sys-2.1.4.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/hts-sys/2.1.4/download?dummy=/rust/crates/hts-sys-2.1.4.crate rust/crates/hts-sys-2.1.4.crate 4820 kB 8740 kBps 00s => rust/crates/intervallum-1.4.1.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/intervallum/1.4.1/download?dummy=/rust/crates/intervallum-1.4.1.crate rust/crates/intervallum-1.4.1.crate 23 kB 310 kBps 00s => rust/crates/linear-map-1.2.0.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/linear-map/1.2.0/download?dummy=/rust/crates/linear-map-1.2.0.crate rust/crates/linear-map-1.2.0.crate 18 kB 57 MBps 00s => rust/crates/murmurhash3-0.0.5.crate doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://crates.io/api/v1/crates/murmurhash3/0.0.5/download?dummy=/rust/crates/murmurhash3-0.0.5.crate rust/crates/murmurhash3-0.0.5.crate 4816 B 27 MBps 00s | = help: consider using a Cargo feature instead = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [lints.rust] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(fbsd14)'] } = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(fbsd14)");` to the top of the `build.rs` = note: see for more information about checking conditional configuration warning: unexpected `cfg` condition name: `fbsd14` --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/nix-0.26.4/src/sys/aio.rs:627:12 | 627 | #[cfg_attr(fbsd14, doc = " ```")] | ^^^^^^ | = help: consider using a Cargo feature instead = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [lints.rust] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(fbsd14)'] } = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(fbsd14)");` to the top of the `build.rs` = note: see for more information about checking conditional configuration warning: unexpected `cfg` condition name: `fbsd14` --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/nix-0.26.4/src/sys/aio.rs:628:16 | 628 | #[cfg_attr(not(fbsd14), doc = " ```no_run")] | ^^^^^^ | = help: consider using a Cargo feature instead = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [lints.rust] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(fbsd14)'] } = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(fbsd14)");` to the top of the `build.rs` = note: see for more information about checking conditional configuration warning: unexpected `cfg` condition name: `fbsd14` --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/nix-0.26.4/src/sys/aio.rs:862:12 | 862 | #[cfg_attr(fbsd14, doc = " ```")] | ^^^^^^ | = help: consider using a Cargo feature instead = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [lints.rust] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(fbsd14)'] } = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(fbsd14)");` to the top of the `build.rs` = note: see for more information about checking conditional configuration warning: unexpected `cfg` condition name: `fbsd14` --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/nix-0.26.4/src/sys/aio.rs:863:16 | 863 | #[cfg_attr(not(fbsd14), doc = " ```no_run")] | ^^^^^^ | = help: consider using a Cargo feature instead = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [lints.rust] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(fbsd14)'] } = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(fbsd14)");` to the top of the `build.rs` = note: see for more information about checking conditional configuration [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] exit status: 0 [hts-sys 2.1.4] cargo:rerun-if-env-changed=AR_aarch64-unknown-freebsd [hts-sys 2.1.4] AR_aarch64-unknown-freebsd = None [hts-sys 2.1.4] cargo:rerun-if-env-changed=AR_aarch64_unknown_freebsd [hts-sys 2.1.4] AR_aarch64_unknown_freebsd = None [hts-sys 2.1.4] cargo:rerun-if-env-changed=HOST_AR [hts-sys 2.1.4] HOST_AR = None [hts-sys 2.1.4] cargo:rerun-if-env-changed=AR [hts-sys 2.1.4] AR = None [hts-sys 2.1.4] cargo:rerun-if-env-changed=ARFLAGS_aarch64-unknown-freebsd [hts-sys 2.1.4] ARFLAGS_aarch64-unknown-freebsd = None [hts-sys 2.1.4] cargo:rerun-if-env-changed=ARFLAGS_aarch64_unknown_freebsd [hts-sys 2.1.4] ARFLAGS_aarch64_unknown_freebsd = None [hts-sys 2.1.4] cargo:rerun-if-env-changed=HOST_ARFLAGS [hts-sys 2.1.4] HOST_ARFLAGS = None [hts-sys 2.1.4] cargo:rerun-if-env-changed=ARFLAGS [hts-sys 2.1.4] ARFLAGS = None [hts-sys 2.1.4] cargo:rustc-link-lib=static=hts [hts-sys 2.1.4] cargo:rustc-link-search=native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out [hts-sys 2.1.4] cargo:rerun-if-changed=linux_prebuilt_bindings.rs [hts-sys 2.1.4] cargo:root=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out [hts-sys 2.1.4] cargo:include=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out/include [hts-sys 2.1.4] cargo:libdir=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out [hts-sys 2.1.4] cargo:rerun-if-changed=wrapper.c [hts-sys 2.1.4] cargo:rerun-if-changed=wrapper.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/bcf_sr_sort.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/fuzz_settings.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/header.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/hfile_internal.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/hts_internal.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/hts_time_funcs.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/sam_internal.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/textutils_internal.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/thread_pool_internal.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_codecs.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_decode.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_encode.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_index.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_io.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_samtools.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_stats.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/cram_structs.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/mFILE.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/misc.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/open_trace_file.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/os.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/pooled_alloc.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/cram/string_alloc.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/bgzf.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/cram.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/faidx.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/hfile.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/hts.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/hts_defs.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/hts_endian.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/hts_expr.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/hts_log.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/hts_os.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/kbitset.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/kfunc.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/khash.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/khash_str2int.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/klist.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/knetfile.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/kroundup.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/kseq.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/ksort.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/kstring.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/regidx.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/sam.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/synced_bcf_reader.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/tbx.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/thread_pool.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/vcf.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/vcf_sweep.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/htslib/vcfutils.h [hts-sys 2.1.4] cargo:rerun-if-changed=htslib/os/lzma_stub.h Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=hts_sys CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/hts-sys-2.1.4 CARGO_PKG_AUTHORS='Christopher Schröder :Johannes Köster ' CARGO_PKG_DESCRIPTION='This library provides HTSlib bindings.' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE=MIT CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=hts-sys CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/samtools/htslib.git' CARGO_PKG_RUST_VERSION='' CARGO_PKG_VERSION=2.1.4 CARGO_PKG_VERSION_MAJOR=2 CARGO_PKG_VERSION_MINOR=1 CARGO_PKG_VERSION_PATCH=4 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps OUT_DIR=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out /usr/local/bin/rustc --crate-name hts_sys --edition=2018 /wrkdirs/usr/ports/biology/coverm/work/Cov erM-0.7.0/cargo-crates/hts-sys-2.1.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C panic=abort -C linker-plugin-lto -C codegen-units=1 --check-cfg 'cfg(docsrs)' --check-cfg 'cfg(feature, values("bindgen", "bzip2", "bzip2-sys", "curl", "curl-sys", "default", "gcs", "libdeflate", "libdeflate-sys", "lzma", "lzma-sys", "openssl-sys", "s3", "static"))' -C metadata=b510018389996494 -C extra-filename=-b510018389996494 --out-dir /wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps --target aarch64-unknown-freebsd -C linker=cc -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps --extern libz_sys=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liblibz_sys-f52ac8cc52e0178a.rmeta --ca p-lints warn -C target-cpu= -C link-arg=-fstack-protector-strong -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out -l static=hts -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/libz-sys-684a3192ae32406a/out/lib -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/libz-sys-684a3192ae32406a/out/lib64` warning: fields `1` and `2` are never read --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/nix-0.26.4/src/sys/sendfile.rs:76:13 | 74 | struct SendfileHeaderTrailer<'a>( | --------------------- fields in this struct 75 | libc::sf_hdtr, 76 | Option>>, | ^^^^^^^^^^^^^^^^^^^^^^^^ 77 | Option>>, | ^^^^^^^^^^^^^^^^^^^^^^^^ | = help: consider removing these fields = note: `SendfileHeaderTrailer` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis note: the lint level is defined here --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/nix-0.26.4/src/lib.rs:48:9 | 48 | #![deny(unused)] | ^^^^^^ = note: `#[warn(dead_code)]` implied by `#[warn(unused)]` Compiling rust-htslib v0.44.1 Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=rust_htslib CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1 CARGO_PKG_AUTHORS='Christopher Schröder :Johannes Köster ' CARGO_PKG_DESCRIPTION='This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE=MIT CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=rust-htslib CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/rust-bio/rust-htslib.git' CARGO_PKG_RUST_VERSION='' CARGO_PKG_VERSION=0.44.1 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=44 CARGO_PKG_VERSION_PATCH=1 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps /usr/local/bin/rustc --crate-name rust_htslib --edition=2018 /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0. 44.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C panic=abort -C linker-plugin-lto -C codegen-units=1 --check-cfg 'cfg(docsrs)' --check-cfg 'cfg(feature, values("bindgen", "bzip2", "curl", "default", "gcs", "libdeflate", "lzma", "s3", "serde", "serde_bytes", "serde_feature", "static"))' -C metadata=4c5aa3de3aedb7e0 -C extra-filename=-4c5aa3de3aedb7e0 --out-dir /wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps --target aarch64-unknown-freebsd -C linker=cc -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps --extern bio_types=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libbio_types-e5f75acb35217a42.rmeta --extern byteorder=/wrkdirs/usr/ports/biology/coverm/work/targe t/aarch64-unknown-freebsd/release/deps/libbyteorder-ee8b549e2ce56138.rmeta --extern custom_derive=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libcustom_derive-1d00d00ea6f6dc35.rmeta --extern derive_new=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libderive_new-68ba6804c1ede7db.so --extern hts_sys=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libhts_sys-b510018389996494.rmeta --extern ieee754=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libieee754-1edd20c838f33735.rmeta --extern lazy_static=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liblazy_static-f0f5d26ba8fbf548.rmeta --extern libc=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liblibc-98312f2008beb298.rmeta --extern linear_map=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liblinear_map- eb619ebad7b9c7bc.rmeta --extern newtype_derive=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libnewtype_derive-cd84fa2862f73e0d.rmeta --extern regex=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libregex-c19639fd1a51aeaf.rmeta --extern thiserror=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libthiserror-08a47ae6370203d1.rmeta --extern url=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liburl-43cd34a8b6aac136.rmeta --cap-lints warn -C target-cpu= -C link-arg=-fstack-protector-strong -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/libz-sys-684a3192ae32406a/out/lib -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/libz-sys-6 84a3192ae32406a/out/lib64` error[E0308]: mismatched types --> /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1/src/bam/record.rs:2324:17 | 2319 | let ret = hts_sys::bam_mods_query_type( | ---------------------------- arguments to this function are incorrect ... 2324 | &mut canonical, | ^^^^^^^^^^^^^^ expected `*mut u8`, found `&mut i8` | = note: expected raw pointer `*mut u8` found mutable reference `&mut i8` note: function defined here --> /wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out/bindings.rs:9439:12 | 9439 | pub fn bam_mods_query_type( | ^^^^^^^^^^^^^^^^^^^ For more information about this error, try `rustc --explain E0308`. error: could not compile `rust-htslib` (lib) due to 1 previous error Caused by: process didn't exit successfully: `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=rust_htslib CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/cargo-crates/rust-htslib-0.44.1 CARGO_PKG_AUTHORS='Christopher Schröder :Johannes Köster ' CARGO_PKG_DESCRIPTION='This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE=MIT CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=rust-htslib CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/rust-bio/rust-htslib.git' CARGO_PKG_RUST_VERSION='' CARGO_PKG_VERSION=0.44.1 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=44 CARGO_PKG_VERSION_PATCH=1 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps /usr/local/bin/rustc --crate-name rust_htslib --edition=2018 /wrkdirs/usr/ports/biology/coverm/work/CoverM-0.7.0/carg o-crates/rust-htslib-0.44.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C panic=abort -C linker-plugin-lto -C codegen-units=1 --check-cfg 'cfg(docsrs)' --check-cfg 'cfg(feature, values("bindgen", "bzip2", "curl", "default", "gcs", "libdeflate", "lzma", "s3", "serde", "serde_bytes", "serde_feature", "static"))' -C metadata=4c5aa3de3aedb7e0 -C extra-filename=-4c5aa3de3aedb7e0 --out-dir /wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps --target aarch64-unknown-freebsd -C linker=cc -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps -L dependency=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps --extern bio_types=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libbio_types-e5f75acb35217a42.rmeta --extern byteorder=/wrkdirs/usr/ports/bi ology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libbyteorder-ee8b549e2ce56138.rmeta --extern custom_derive=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libcustom_derive-1d00d00ea6f6dc35.rmeta --extern derive_new=/wrkdirs/usr/ports/biology/coverm/work/target/release/deps/libderive_new-68ba6804c1ede7db.so --extern hts_sys=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libhts_sys-b510018389996494.rmeta --extern ieee754=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libieee754-1edd20c838f33735.rmeta --extern lazy_static=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liblazy_static-f0f5d26ba8fbf548.rmeta --extern libc=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liblibc-98312f2008beb298.rmeta --extern linear_map=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/rele ase/deps/liblinear_map-eb619ebad7b9c7bc.rmeta --extern newtype_derive=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libnewtype_derive-cd84fa2862f73e0d.rmeta --extern regex=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libregex-c19639fd1a51aeaf.rmeta --extern thiserror=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/libthiserror-08a47ae6370203d1.rmeta --extern url=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/deps/liburl-43cd34a8b6aac136.rmeta --cap-lints warn -C target-cpu= -C link-arg=-fstack-protector-strong -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/hts-sys-81557c27094014bc/out -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/release/build/libz-sys-684a3192ae32406a/out/lib -L native=/wrkdirs/usr/ports/biology/coverm/work/target/aarch64-unknown-freebsd/r elease/build/libz-sys-684a3192ae32406a/out/lib64` (exit status: 1) warning: build failed, waiting for other jobs to finish... warning: `nix` (lib) generated 9 warnings *** Error code 101 Stop. make: stopped in /usr/ports/biology/coverm