[package - main-armv7-default][devel/py-pykdtree] Failed for py311-pykdtree-1.3.13 in build
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Date: Fri, 04 Oct 2024 05:10:26 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: sunpoet@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p4a16d2e85dd9_sb7cbf741d/logs/py311-pykdtree-1.3.13.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p4a16d2e85dd9_sb7cbf741d
Log:
=>> Building devel/py-pykdtree
build started at Fri Oct 4 05:09:57 UTC 2024
port directory: /usr/ports/devel/py-pykdtree
package name: py311-pykdtree-1.3.13
building for: FreeBSD main-armv7-default-job-09 15.0-CURRENT FreeBSD 15.0-CURRENT 1500023 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 848 Sep 17 01:02 /usr/ports/devel/py-pykdtree/Makefile
Ports top last git commit: 4a16d2e85dd
Ports top unclean checkout: no
Port dir last git commit: 80435a02822
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500023
Job Id: 09
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PORT_FLAGS=
PKGENV=
FLAVOR=py311
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---End OPTIONS List---
--MAINTAINER--
sunpoet@FreeBSD.org
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PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.cache HOME=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/devel/py-pykdtree/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-pykdtree DOCSDIR=/usr/local/share/doc/py311-pykdtree EXAMPLESDIR=/usr/local/share/examples/py311-pykdtree WWWDIR=/usr/local/www/py311-pykdtree ETCDIR=/usr/local/etc/py311-pykdtree
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
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WRKDIRPREFIX=/wrkdirs
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-pykdtree-1.3.13 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-armv7-default-job-09] Installing pkg-1.21.3...
[main-armv7-default-job-09] Extracting pkg-1.21.3: .......... done
===> py311-pykdtree-1.3.13 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-pykdtree-1.3.13
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by py311-pykdtree-1.3.13 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by py311-pykdtree-1.3.13 for building
=> SHA256 Checksum OK for pykdtree-1.3.13.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL3 accepted by the user
===> Fetching all distfiles required by py311-pykdtree-1.3.13 for building
===> Extracting for py311-pykdtree-1.3.13
=> SHA256 Checksum OK for pykdtree-1.3.13.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py311-pykdtree-1.3.13
===> Applying FreeBSD patches for py311-pykdtree-1.3.13 from /usr/ports/devel/py-pykdtree/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-pykdtree-1.3.13 depends on package: py311-cython3>=0 - not found
===> Installing existing package /packages/All/py311-cython3-3.0.11.pkg
[main-armv7-default-job-09] Installing py311-cython3-3.0.11...
[main-armv7-default-job-09] `-- Installing python311-3.11.10...
[main-armv7-default-job-09] | `-- Installing gettext-runtime-0.22.5...
[main-armv7-default-job-09] | | `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-09] | | `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-09] | `-- Extracting gettext-runtime-0.22.5: .......... done
[main-armv7-default-job-09] | `-- Installing libffi-3.4.6...
[main-armv7-default-job-09] | `-- Extracting libffi-3.4.6: .......... done
[main-armv7-default-job-09] | `-- Installing mpdecimal-4.0.0...
[main-armv7-default-job-09] | `-- Extracting mpdecimal-4.0.0: .......... done
[main-armv7-default-job-09] | `-- Installing readline-8.2.13...
[main-armv7-default-job-09] | `-- Extracting readline-8.2.13: .......... done
[main-armv7-default-job-09] `-- Extracting python311-3.11.10: .......... done
[main-armv7-default-job-09] Extracting py311-cython3-3.0.11: .......... done
=====
Message from python311-3.11.10:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> py311-pykdtree-1.3.13 depends on package: py311-cython3>=0 - found
===> Returning to build of py311-pykdtree-1.3.13
===> py311-pykdtree-1.3.13 depends on package: py311-numpy>=0,1 - not found
===> Installing existing package /packages/All/py311-numpy-1.26.4_2,1.pkg
[main-armv7-default-job-09] Installing py311-numpy-1.26.4_2,1...
[main-armv7-default-job-09] `-- Installing gcc13-13.3.0...
[main-armv7-default-job-09] | `-- Installing binutils-2.43,1...
[main-armv7-default-job-09] | | `-- Installing zstd-1.5.6...
[main-armv7-default-job-09] | | `-- Installing liblz4-1.10.0,1...
[main-armv7-default-job-09] | | `-- Extracting liblz4-1.10.0,1: .......... done
[main-armv7-default-job-09] | | `-- Extracting zstd-1.5.6: .......... done
[main-armv7-default-job-09] | `-- Extracting binutils-2.43,1: .......... done
[main-armv7-default-job-09] | `-- Installing gmp-6.3.0...
[main-armv7-default-job-09] | `-- Extracting gmp-6.3.0: .......... done
[main-armv7-default-job-09] | `-- Installing mpc-1.3.1_1...
[main-armv7-default-job-09] | | `-- Installing mpfr-4.2.1,1...
[main-armv7-default-job-09] | | `-- Extracting mpfr-4.2.1,1: .......... done
[main-armv7-default-job-09] | `-- Extracting mpc-1.3.1_1: ......... done
[main-armv7-default-job-09] `-- Extracting gcc13-13.3.0: .......... done
[main-armv7-default-job-09] `-- Installing openblas-0.3.27,2...
[main-armv7-default-job-09] `-- Extracting openblas-0.3.27,2: .......... done
[main-armv7-default-job-09] `-- Installing py311-setuptools-63.1.0_1...
[main-armv7-default-job-09] `-- Extracting py311-setuptools-63.1.0_1: .......... done
[main-armv7-default-job-09] `-- Installing suitesparse-umfpack-6.3.3_1...
[main-armv7-default-job-09] | `-- Installing suitesparse-amd-3.3.2...
[main-armv7-default-job-09] | | `-- Installing suitesparse-config-7.7.0_1...
[main-armv7-default-job-09] | | `-- Extracting suitesparse-config-7.7.0_1: .......... done
[main-armv7-default-job-09] | `-- Extracting suitesparse-amd-3.3.2: .......... done
[main-armv7-default-job-09] | `-- Installing suitesparse-camd-3.3.2...
[main-armv7-default-job-09] | `-- Extracting suitesparse-camd-3.3.2: .......... done
[main-armv7-default-job-09] | `-- Installing suitesparse-ccolamd-3.3.3...
[main-armv7-default-job-09] | `-- Extracting suitesparse-ccolamd-3.3.3: .......... done
[main-armv7-default-job-09] | `-- Installing suitesparse-cholmod-5.2.1_1...
[main-armv7-default-job-09] | | `-- Installing suitesparse-colamd-3.3.3...
[main-armv7-default-job-09] | | `-- Extracting suitesparse-colamd-3.3.3: .......... done
[main-armv7-default-job-09] | `-- Extracting suitesparse-cholmod-5.2.1_1: .......... done
[main-armv7-default-job-09] `-- Extracting suitesparse-umfpack-6.3.3_1: .......... done
[main-armv7-default-job-09] Extracting py311-numpy-1.26.4_2,1: .......... done
=====
Message from gcc13-13.3.0:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> py311-pykdtree-1.3.13 depends on package: py311-numpy>=0,1 - found
===> Returning to build of py311-pykdtree-1.3.13
===> py311-pykdtree-1.3.13 depends on package: py311-setuptools>=0 - found
===> py311-pykdtree-1.3.13 depends on package: py311-wheel>=0 - not found
===> Installing existing package /packages/All/py311-wheel-0.44.0.pkg
[main-armv7-default-job-09] Installing py311-wheel-0.44.0...
[main-armv7-default-job-09] Extracting py311-wheel-0.44.0: .......... done
===> py311-pykdtree-1.3.13 depends on package: py311-wheel>=0 - found
===> Returning to build of py311-pykdtree-1.3.13
===> py311-pykdtree-1.3.13 depends on file: /usr/local/bin/python3.11 - found
===> py311-pykdtree-1.3.13 depends on package: py311-build>=0 - not found
===> Installing existing package /packages/All/py311-build-1.2.2.pkg
[main-armv7-default-job-09] Installing py311-build-1.2.2...
[main-armv7-default-job-09] `-- Installing py311-packaging-24.1...
[main-armv7-default-job-09] `-- Extracting py311-packaging-24.1: .......... done
[main-armv7-default-job-09] `-- Installing py311-pyproject_hooks-1.1.0_1...
[main-armv7-default-job-09] `-- Extracting py311-pyproject_hooks-1.1.0_1: .......... done
[main-armv7-default-job-09] Extracting py311-build-1.2.2: .......... done
===> py311-pykdtree-1.3.13 depends on package: py311-build>=0 - found
===> Returning to build of py311-pykdtree-1.3.13
===> py311-pykdtree-1.3.13 depends on package: py311-installer>=0 - not found
===> Installing existing package /packages/All/py311-installer-0.7.0.pkg
[main-armv7-default-job-09] Installing py311-installer-0.7.0...
[main-armv7-default-job-09] Extracting py311-installer-0.7.0: .......... done
===> py311-pykdtree-1.3.13 depends on package: py311-installer>=0 - found
===> Returning to build of py311-pykdtree-1.3.13
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-pykdtree-1.3.13
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py311-pykdtree-1.3.13
* Getting build dependencies for wheel...
running egg_info
writing pykdtree.egg-info/PKG-INFO
writing dependency_links to pykdtree.egg-info/dependency_links.txt
writing requirements to pykdtree.egg-info/requires.txt
writing top-level names to pykdtree.egg-info/top_level.txt
reading manifest file 'pykdtree.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files found matching 'pykdtree/render_template.py'
adding license file 'LICENSE.txt'
writing manifest file 'pykdtree.egg-info/SOURCES.txt'
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-311
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-311/pykdtree
copying pykdtree/__init__.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-311/pykdtree
copying pykdtree/test_tree.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-311/pykdtree
running build_ext
Will use gomp for OpenMP.
Compiler: unix / OpenMP: gomp / OpenMP compile args: ['-fopenmp'] / OpenMP link args: ['-lgomp']
Compiling pykdtree/kdtree.pyx because it changed.
[1/1] Cythonizing pykdtree/kdtree.pyx
building 'pykdtree.kdtree' extension
creating build/temp.freebsd-15.0-CURRENT-arm-cpython-311
creating build/temp.freebsd-15.0-CURRENT-arm-cpython-311/pykdtree
cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c pykdtree/_kdtree_core.c -o build/temp.freebsd-15.0-CURRENT-arm-cpython-311/pykdtree/_kdtree_core.o -std=c17 -O3 -fopenmp
cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c pykdtree/kdtree.c -o build/temp.freebsd-15.0-CURRENT-arm-cpython-311/pykdtree/kdtree.o -std=c17 -O3 -fopenmp
pykdtree/kdtree.c:1271:10: fatal error: 'omp.h' file not found
1271 | #include <omp.h>
| ^~~~~~~
1 error generated.
error: command '/usr/bin/cc' failed with exit code 1
ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/devel/py-pykdtree