From nobody Sat Nov 16 03:48:00 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Xr0GT2BD4z5ckmw for ; Sat, 16 Nov 2024 03:48:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.chi.freebsd.org (mxrelay.chi.freebsd.org [IPv6:2610:1c0:1040:6064::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature ECDSA (P-256) client-digest SHA256) (Client CN "mxrelay.chi.freebsd.org", Issuer "E6" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Xr0GS733cz4Qy0 for ; Sat, 16 Nov 2024 03:48:00 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1731728881; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=rVJHDbXtteoT6SeLcL2Qz5o/xGRkHTr4TkucVTRj0A8=; b=pfDagmDlOVC1zgp6mk1lN2DqDe5c5FD0Ww6hxNxP3/ST1YftR+kNehLAq6L4TwRrohKMNs Tx86++L8FsBYyM/iXyUYE8ImCDBBAODteFHXK/zJuK3sFnJ6YUjSJ1j2AjJBkxjo8ywL8f EzksKVLPZDD7UHvVk/2w3K890TSF6N1oEbP5icPquKAUL9uRNaC8OF/OWwN2Kj43bXiCtr x7PnG/iH4jqe3Pf5GEKzPQB8KcB5nAS9zUqINeqqbuH3dYe3AzWwyBt3c4h6jyPxMlyHuV Cg1flIMRzwAfoKuhRC6FKCYFj7ZFC7H0WqYHDrNaPP6z/0CdZYmCCqskmD8G7g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1731728881; a=rsa-sha256; cv=none; b=EbzDOt7WXC/6T2j5/bOOQh0Yl3MOMorLcqAu+okC4zsYg+6/QtCOqfxD9uFFlzCZ7Fn1d5 OPYbn27ISex6XX1HVkn/unTRMpTEbflOprht8WFiq/GVvE54RgYnufo/saPj9PV0DUEloD OcV87csNZ0shqaSVGfEujFtWd15VU8KK+Q5lGtrS/2/CCwM5+41cDhR66q9fMddChHGRP0 hwT+4zVe42Wm62TJm/OHqU+/TLSJVnA8m+c9flpR2Sx0JnOv5IvEs79ZhKthsyytBJCQ5A 7vljH1RFhmMsZcbGXIuqJ3w+NlW3n555q6vpOkOazaczCQJ2kHb860FnkEn99g== Received: from beefy22.chi.freebsd.org (beefy22.chi.freebsd.org [IPv6:2610:1c0:1040:6080::16:16]) by mxrelay.chi.freebsd.org (Postfix) with ESMTP id 9CE6A6E71 for ; Sat, 16 Nov 2024 03:48:00 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 6b5f by beefy22.chi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy22.chi.freebsd.org); Sat, 16 Nov 2024 03:48:00 +0000 To: jwb@FreeBSD.org Subject: [package - 141amd64-default][biology/sra-tools] Failed for sra-tools-3.0.6 in package Cc: pkg-fallout@FreeBSD.org Date: Sat, 16 Nov 2024 03:48:00 +0000 Message-Id: <673815f0.6b5f.e329946@beefy22.chi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy22/data/141amd64-default/9c8dd30387a6/logs/sra-tools-3.0.6.log Build URL: https://pkg-status.freebsd.org/beefy22/build.html?mastername=141amd64-default&build=9c8dd30387a6 Log: =>> Building biology/sra-tools build started at Sat Nov 16 03:41:47 UTC 2024 port directory: /usr/ports/biology/sra-tools package name: sra-tools-3.0.6 building for: FreeBSD 141amd64-default-job-32 14.1-RELEASE-p6 FreeBSD 14.1-RELEASE-p6 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2155 May 21 01:01 /usr/ports/biology/sra-tools/Makefile Ports top last git commit: 9c8dd30387 Ports top unclean checkout: no Port dir last git commit: a40e262549 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1401000 Job Id: 32 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1401000 UNAME_v=FreeBSD 14.1-RELEASE-p6 UNAME_r=14.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/141amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/141amd64-default/32/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=141amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/141amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for sra-tools-3.0.6: EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/sra-tools/work/.cache HOME=/wrkdirs/usr/ports/biology/sra-tools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/sra-tools/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/sra-tools/work/.cache HOME=/wrkdirs/usr/ports/biology/sra-tools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/sra-tools/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/sra-tools/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="in stall -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTEXAMPLES="" JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" CMAKE_BUILD_TYPE="release" OSREL=14.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/sra-tools" EXAMPLESDIR="share/examples/sra-tools" DATADIR="share/sra-tools" WWWDIR="www/sra-tools" ETCDIR="etc/sra-tools" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="17+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sra-tools DOCSDIR=/usr/local/share/doc/sra-tools EXAMPLESDIR=/usr/local/share/examples/sra-tools WWWDIR=/usr/local/www/sra-tools ETCDIR=/usr/local/etc/sra-tools --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD LGPL21+ accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> sra-tools-3.0.6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [141amd64-default-job-32] Installing pkg-1.21.3... [141amd64-default-job-32] Extracting pkg-1.21.3: .......... done ===> sra-tools-3.0.6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of sra-tools-3.0.6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD LGPL21+ accepted by the user ===> Fetching all distfiles required by sra-tools-3.0.6 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD LGPL21+ accepted by the user ===> Fetching all distfiles required by sra-tools-3.0.6 for building => SHA256 Checksum OK for ncbi-sra-tools-3.0.6_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ncbi-vdb-3.0.6_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD LGPL21+ accepted by the user ===> Fetching all distfiles required by sra-tools-3.0.6 for building ===> Extracting for sra-tools-3.0.6 => SHA256 Checksum OK for ncbi-sra-tools-3.0.6_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ncbi-vdb-3.0.6_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for sra-tools-3.0.6 ===> Applying FreeBSD patches for sra-tools-3.0.6 from /usr/ports/biology/sra-tools/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> sra-tools-3.0.6 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.37.pkg [141amd64-default-job-32] Installing bash-5.2.37... [141amd64-default-job-32] `-- Installing gettext-runtime-0.22.5... [141amd64-default-job-32] | `-- Installing indexinfo-0.3.1... [141amd64-default-job-32] | `-- Extracting indexinfo-0.3.1: .... done [141amd64-default-job-32] `-- Extracting gettext-runtime-0.22.5: .......... done [141amd64-default-job-32] `-- Installing readline-8.2.13_2... [141amd64-default-job-32] `-- Extracting readline-8.2.13_2: .......... done [141amd64-default-job-32] Extracting bash-5.2.37: .......... done ===> sra-tools-3.0.6 depends on executable: bash - found ===> Returning to build of sra-tools-3.0.6 ===> sra-tools-3.0.6 depends on file: /usr/local/openjdk17/bin/java - not found ===> Installing existing package /packages/All/openjdk17-17.0.13+11.1.pkg [141amd64-default-job-32] Installing openjdk17-17.0.13+11.1... [141amd64-default-job-32] `-- Installing alsa-lib-1.2.12... [141amd64-default-job-32] `-- Extracting alsa-lib-1.2.12: .......... done [141amd64-default-job-32] `-- Installing fontconfig-2.15.0_3,1... [141amd64-default-job-32] | `-- Installing expat-2.6.3... [141amd64-default-job-32] | `-- Extracting expat-2.6.3: .......... done -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/VTable.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ErrorMsg.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadGroupItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ReadCollection.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Package.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ErrorMsg.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/jar/ngs-java.jar -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/examples/AlignTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/examples/AlignSliceTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/examples/FragTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/examples/PileupTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/examples/RefTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/examples/ReadGroupTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/examples/DumpReferenceFASTA.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/Makefile -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/README.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java/expected.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/jar/ngs-examples.jar -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/package-search-index.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Pileup.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/PileupEvent.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Fragment.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/package-tree.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReadGroup.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Package.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Statistics.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReadIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/PileupEventIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReferenceIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/FragmentIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReadCollection.html -- Installing: 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/wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Alignment.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/index.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/type-search-index.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/allpackages-index.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/serialized-form.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/element-list -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/index-all.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/help-doc.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/module-search-index.js 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/wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ngs-pileup.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ngs-pileup.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ngs-pileup -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/rcexplain.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/rcexplain.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/rcexplain -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/kdbmeta.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/kdbmeta.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/kdbmeta -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/align-info.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/align-info.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/align-info -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ref-variation.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ref-variation.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ref-variation -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/var-expand.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/var-expand.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/var-expand -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-search.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-search.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-search -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/test-sra.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/test-sra.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/test-sra -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/cache-mgr.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/cache-mgr.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/cache-mgr -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sratools.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sratools.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sratools -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-info.3.0.6 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-info.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-info /usr/bin/strip /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/*.3.0.6 /bin/mv /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-sratools /bin/mkdir -p /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools /bin/mv /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-sratools/* /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools /bin/rmdir /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-sratools /bin/mv /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-java /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java /bin/mv /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples-python /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python ====> Compressing man pages (compress-man) ===> Installing ldconfig configuration file =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-11-16T03:41:47+0000' 'PKG_NOTE_ports_top_git_hash=9c8dd30387' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=a40e262549' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for sra-tools-3.0.6 ===> Building sra-tools-3.0.6 pkg-static: Unable to access file /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script-dir/jquery-3.6.1.min.js:No such file or directory *** Error code 1 Stop. make: stopped in /usr/ports/biology/sra-tools