From nobody Sun Nov 03 08:16:55 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Xh6rm1lRyz5c6XL for ; Sun, 03 Nov 2024 08:16:56 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R10" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Xh6rl6LFtz4NCn for ; Sun, 3 Nov 2024 08:16:55 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1730621815; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=XjY5YxSvHmwLVqvJ5HYKhbUgkSMGpctIOsIteNNRU1M=; b=Co1z+TdzB4CbPCAVxpJ8BJMdUt6E8JwNNZMPVHTE04HjmiulZrG5uC7ctkSqpgdKzyj1sF jdY5S3xAnkSXVrrbhP3X+OoLMJJjzmwySlXD2XIsDIvZMCmTk28GbfZBl5WSwJAmepJhTh qb+4t+9NBWVUjGEsxrLi5kqZpFennUFUZNM9L7ULn0L+JvJNPBFzQdzJ3VZzHwb3Z4Nb0A C7u1ZPyUdnSKUiJD3zAZnx9AqkXaW8iZ3TNJg0j3yFcnvyzg4QmOQRTiDy/7XgmkAIecde HuUEIWp9bKqgROH4tdSC1mDMNKpnHrUhjfXh9TTqkjSNucXdfRMFx6GrEhFZLA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1730621815; a=rsa-sha256; cv=none; b=ZwACmr8A27YzeYVUXNXTQKFdWHyzKUrAEZQcIlJB1ER9ve6RV/0DZ4QggIMd/Azu2PJJQ1 3NQF0YfCmT/8hlme6/EltN4K8dn5TQ6hxCNfivPujb+lOGelFblSutoh9ZU09JQ4BY8o31 I9y3mOdEjPe/aROmWKixuYtJAseSCuL43fPEXvjVOIQBnMJMtULC7BfYL1R8GS69kGk+bl 8I9WOamSM4pm0x5Yr21OceGzso+Zzb73e3J2j8rSrkOx2pmMJlfbRok4DU05d7jIUiZTSJ EZcHaaAnWmJ4zgaR0u/diRzhgDsc0uvCLOhPM3j5mABzjeMM0WG4TcEwqnfIMQ== Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4Xh6rl5qkLzhDJ for ; Sun, 3 Nov 2024 08:16:55 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 7408 by beefy18.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy18.nyi.freebsd.org); Sun, 03 Nov 2024 08:16:55 +0000 To: yuri@FreeBSD.org Subject: [package - main-amd64-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-28.0.9 in build Cc: pkg-fallout@FreeBSD.org Date: Sun, 03 Nov 2024 08:16:55 +0000 Message-Id: <67273177.7408.1bf86dc5@beefy18.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p009a7c198ee2_s8d6feaaaa26/logs/ncbi-cxx-toolkit-28.0.9.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p009a7c198ee2_s8d6feaaaa26 Log: =>> Building biology/ncbi-cxx-toolkit build started at Sun Nov 3 08:08:28 UTC 2024 port directory: /usr/ports/biology/ncbi-cxx-toolkit package name: ncbi-cxx-toolkit-28.0.9 building for: FreeBSD main-amd64-default-job-08 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1674 Oct 10 01:01 /usr/ports/biology/ncbi-cxx-toolkit/Makefile Ports top last git commit: 009a7c198ee Ports top unclean checkout: no Port dir last git commit: ab7fca0451a Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1500026 Job Id: 08 !!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500026 UNAME_v=FreeBSD 15.0-CURRENT 1500026 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-amd64-default/08/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --without-debug --with-dll --without-static --without-vdb --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ncbi-cxx-toolkit" EXAMPLESDIR="share/examples/ncbi-cxx-toolkit" DATADIR="share/ncbi-cxx-toolkit" WWWDIR="www/ncbi-cxx-toolkit" ETCDIR="etc/ncbi-cxx-toolkit" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-cxx-toolkit DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- ulimit: can't get limit: Invalid argument cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-cxx-toolkit-28.0.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [main-amd64-default-job-08] Installing pkg-1.21.3... [main-amd64-default-job-08] Extracting pkg-1.21.3: .......... done ===> ncbi-cxx-toolkit-28.0.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-cxx-toolkit-28.0.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-28.0.9 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-28.0.9 for building => SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-28.0.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-28.0.9 for building ===> Extracting for ncbi-cxx-toolkit-28.0.9 => SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-28.0.9_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ncbi-cxx-toolkit-28.0.9 ===> Applying FreeBSD patches for ncbi-cxx-toolkit-28.0.9 from /usr/ports/biology/ncbi-cxx-toolkit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-cxx-toolkit-28.0.9 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [main-amd64-default-job-08] Installing gmake-4.4.1... [main-amd64-default-job-08] `-- Installing gettext-runtime-0.22.5... [main-amd64-default-job-08] | `-- Installing indexinfo-0.3.1... [main-amd64-default-job-08] | `-- Extracting indexinfo-0.3.1: .... done [main-amd64-default-job-08] `-- Extracting gettext-runtime-0.22.5: .......... done [main-amd64-default-job-08] Extracting gmake-4.4.1: .......... done /bin/ln -f .xregexp.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/status/.xregexp.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/xregexp TMPL=xregexp_template_tester -j3 --jobserver-auth=fifo:/tmp/GMfifo57031 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/xregexp/regexp_template_tester.cpp. /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -shared -o libxregexp_template_tester.so -Wl,-rpath,/usr/local/lib -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O -fPIC regexp_template_tester.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/lib -L/usr/local/lib -lpcre /bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/lib /bin/ln -f libxregexp_template_tester.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/lib/libxregexp_template_tester.so /bin/ln -f .xregexp_template_tester.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/xregexp' /usr/local/bin/gmake -C compress -j3 --jobserver-auth=fifo:/tmp/GMfifo53536 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. /usr/local/bin/gmake -C bzip2 -j3 --jobserver-auth=fifo:/tmp/GMfifo59477 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/bzip2 TMPL=bzip2 -j3 --jobserver-auth=fifo:/tmp/GMfifo59491 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/bzip2' /usr/local/bin/gmake -C zlib -j3 --jobserver-auth=fifo:/tmp/GMfifo59477 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/zlib TMPL=zlib -j3 --jobserver-auth=fifo:/tmp/GMfifo59520 mark-as-disabled gmake[6]: warning: -j3 forced in submake: resetting jobserver mode. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/zlib' /usr/local/bin/gmake -C api -j3 --jobserver-auth=fifo:/tmp/GMfifo59477 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/tmp/GMfifo59544 export-headers gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/tmp/GMfifo59544 flag-stamps gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api TMPL=compress -j3 --jobserver-auth=fifo:/tmp/GMfifo59544 all gmake[5]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/archive_zip.cpp:61: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/miniz/miniz.c:3098:9: warning: Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files. [-W#pragma-messages] 3098 | #pragma message("Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.") | ^ 1 warning generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/compress.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/stream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/streambuf.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/stream_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/bzip2.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/lzo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/zlib.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/zstd.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/tar.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/archive.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/archive_.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/archive_zip.cpp. /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/compress.cpp -o compress.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/stream.cpp -o stream.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/zstd.cpp -o zstd.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/tar.cpp -o tar.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/archive.cpp -o archive.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -shared -o libxcompress.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/lib -lbz2 -lz -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/lib /bin/ln -f libxcompress.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/lib/libxcompress.so /bin/ln -f .xcompress.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/status/.xcompress.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress/api' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/compress' /usr/local/bin/gmake -C diff -j3 --jobserver-auth=fifo:/tmp/GMfifo53536 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[3]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff TMPL=xdiff -j3 --jobserver-auth=fifo:/tmp/GMfifo60333 export-headers gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff TMPL=xdiff -j3 --jobserver-auth=fifo:/tmp/GMfifo60333 flag-stamps gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff TMPL=xdiff -j3 --jobserver-auth=fifo:/tmp/GMfifo60333 all gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff/diff.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff/dtl/dtl/dtl.hpp:44: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff/dtl/dtl/Diff.hpp:166:27: error: cannot assign to non-static data member within const member function 'enableTrivial' 166 | this->trivial = true; | ~~~~~~~~~~~~~ ^ /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff/dtl/dtl/Diff.hpp:165:14: note: member function 'dtl::Diff::enableTrivial' is declared const here 165 | void enableTrivial () const { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ 1 error generated. gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/Makefile.rules:103: diff.o] Error 1 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff/diff.cpp. /usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/include -DNCBI_BUILD_SESSION_ID=fa7e5dd1-99ba-11ef-9f80-ac1f6bc2542e /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/util/diff/diff.cpp -o diff.o gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' FAILED: src/util/diff/Makefile.xdiff.lib gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[4]: warning: -j3 forced in submake: resetting jobserver mode. /bin/rm -f libxdiff.so libxdiff.so .xdiff.dep .libxdiff.so.stamp /bin/rm -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/lib/libxdiff.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/status/.xdiff.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/build-system/Makefile.meta_l:336: all.nonusr] Error 2 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util/diff' gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build/util' gmake[1]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.9/Clang1912-ReleaseMTDLL64/build' gmake: *** [Makefile:24: all] Error 2 ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped making "build" in /usr/ports/biology/ncbi-cxx-toolkit