[package - main-amd64-default][math/libmesh] Failed for libmesh-1.7.5 in build
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Date: Sun, 03 Nov 2024 04:13:22 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p009a7c198ee2_s8d6feaaaa26/logs/libmesh-1.7.5.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p009a7c198ee2_s8d6feaaaa26
Log:
=>> Building math/libmesh
build started at Sun Nov 3 03:56:58 UTC 2024
port directory: /usr/ports/math/libmesh
package name: libmesh-1.7.5
building for: FreeBSD main-amd64-default-job-08 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 3652 Nov 2 01:01 /usr/ports/math/libmesh/Makefile
Ports top last git commit: 009a7c198ee
Ports top unclean checkout: no
Port dir last git commit: 4c9739d1ae4
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500026
Job Id: 08
!!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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---Begin OPTIONS List---
===> The following configuration options are available for libmesh-1.7.5:
EXAMPLES=on: Build and/or install examples
GLPK=off: Glpk linear programming solver library
HDF5=off: HDF-5 data format support
MPI=on: MPI (Message Passing Interface) support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--disable-static --with-methods=opt --with-thread-model=pthread --datarootdir=/usr/local/share/libmesh --enable-amr --enable-nlopt --disable-strict-lgpl --enable-tetgen --enable-triagle --with-boost=/usr/local --with-eigen-include=/usr/local/include/eigen3 --disable-netcdf --disable-netcdf-4 --disable-metaphysicl --with-nlopt-include=/usr/local/include --with-nlopt-lib=/usr/local/lib --enable-examples --disable-glpk --disable-hdf5 --enable-mpi --with-mpi=/usr/local --with-mpi-include=/usr/local/include --with-mpi-lib=/usr/local/lib --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
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ntrib/parmetis/include -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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--End PLIST_SUB--
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#### ####
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> libmesh-1.7.5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-amd64-default-job-08] Installing pkg-1.21.3...
[main-amd64-default-job-08] Extracting pkg-1.21.3: .......... done
===> libmesh-1.7.5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of libmesh-1.7.5
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
=> libmesh-1.7.5.tar.xz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://github.com/libMesh/libmesh/releases/download/v1.7.5/libmesh-1.7.5.tar.xz
libmesh-1.7.5.tar.xz 11 MB 76 MBps 00s
===> Fetching all distfiles required by libmesh-1.7.5 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by libmesh-1.7.5 for building
=> SHA256 Checksum OK for libmesh-1.7.5.tar.xz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by libmesh-1.7.5 for building
===> Extracting for libmesh-1.7.5
=> SHA256 Checksum OK for libmesh-1.7.5.tar.xz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for libmesh-1.7.5
===> Applying FreeBSD patches for libmesh-1.7.5 from /usr/ports/math/libmesh/files
===========================================================================
=======================<phase: build-depends >============================
<snip>
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/solvers/twostep_time_solver.C:26:
In file included from ./include/libmesh/parameter_vector.h:26:
./include/libmesh/parameter_accessor.h:115:95: error: no member named 'get' in 'ParameterProxy<T>'
115 | ParameterProxy & operator = (const ParameterProxy<T> & new_value) { _accessor.set(new_value.get()); }
| ~~~~~~~~~ ^
In file included from src/systems/continuation_system.C:19:
In file included from ./include/libmesh/equation_systems.h:26:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Elem *>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2047:30: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Elem *>' requested here
2047 | MeshBase::element_iterator : variant_filter_iterator<MeshBase::Predicate, Elem *>
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Elem *>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/systems/continuation_system.C:19:
In file included from ./include/libmesh/equation_systems.h:26:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Elem *const>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2065:36: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Elem *const>' requested here
2065 | MeshBase::const_element_iterator : variant_filter_iterator<MeshBase::Predicate,
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Elem *const>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/systems/continuation_system.C:19:
In file included from ./include/libmesh/equation_systems.h:26:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Node *>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2099:27: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Node *>' requested here
2099 | MeshBase::node_iterator : variant_filter_iterator<MeshBase::Predicate, Node *>
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Node *>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/systems/continuation_system.C:19:
In file included from ./include/libmesh/equation_systems.h:26:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Node *const>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2119:33: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Node *const>' requested here
2119 | MeshBase::const_node_iterator : variant_filter_iterator<MeshBase::Predicate,
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Node *const>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
4 warnings and 1 error generated.
gmake[1]: *** [Makefile:28085: src/solvers/libmesh_opt_la-twostep_time_solver.lo] Error 1
gmake[1]: *** Waiting for unfinished jobs....
In file included from src/solvers/unsteady_solver.C:22:
In file included from ./include/libmesh/diff_system.h:27:
In file included from ./include/libmesh/implicit_system.h:24:
In file included from ./include/libmesh/explicit_system.h:24:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Elem *>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2047:30: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Elem *>' requested here
2047 | MeshBase::element_iterator : variant_filter_iterator<MeshBase::Predicate, Elem *>
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Elem *>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/solvers/unsteady_solver.C:22:
In file included from ./include/libmesh/diff_system.h:27:
In file included from ./include/libmesh/implicit_system.h:24:
In file included from ./include/libmesh/explicit_system.h:24:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Elem *const>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2065:36: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Elem *const>' requested here
2065 | MeshBase::const_element_iterator : variant_filter_iterator<MeshBase::Predicate,
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Elem *const>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/solvers/unsteady_solver.C:22:
In file included from ./include/libmesh/diff_system.h:27:
In file included from ./include/libmesh/implicit_system.h:24:
In file included from ./include/libmesh/explicit_system.h:24:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Node *>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2099:27: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Node *>' requested here
2099 | MeshBase::node_iterator : variant_filter_iterator<MeshBase::Predicate, Node *>
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Node *>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/solvers/unsteady_solver.C:22:
In file included from ./include/libmesh/diff_system.h:27:
In file included from ./include/libmesh/implicit_system.h:24:
In file included from ./include/libmesh/explicit_system.h:24:
In file included from ./include/libmesh/system.h:25:
In file included from ./include/libmesh/elem_range.h:24:
In file included from ./include/libmesh/mesh_base.h:29:
./include/libmesh/variant_filter_iterator.h:54:15: warning: 'iterator<std::forward_iterator_tag, libMesh::Node *const>' is deprecated [-Wdeprecated-declarations]
54 | public std::iterator<std::forward_iterator_tag, Type>
| ^
./include/libmesh/mesh_base.h:2119:33: note: in instantiation of template class 'variant_filter_iterator<libMesh::Predicates::multi_predicate, libMesh::Node *const>' requested here
2119 | MeshBase::const_node_iterator : variant_filter_iterator<MeshBase::Predicate,
| ^
/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::forward_iterator_tag, libMesh::Node *const>' has been explicitly marked deprecated here
23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
| ^
/usr/include/c++/v1/__config:748:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
748 | # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from src/solvers/unsteady_solver.C:25:
In file included from ./include/libmesh/parameter_vector.h:26:
./include/libmesh/parameter_accessor.h:115:95: error: no member named 'get' in 'ParameterProxy<T>'
115 | ParameterProxy & operator = (const ParameterProxy<T> & new_value) { _accessor.set(new_value.get()); }
| ~~~~~~~~~ ^
4 warnings and 1 error generated.
gmake[1]: *** [Makefile:28092: src/solvers/libmesh_opt_la-unsteady_solver.lo] Error 1
4 warnings generated.
mv -f src/systems/.deps/libmesh_opt_la-continuation_system.Tpo src/systems/.deps/libmesh_opt_la-continuation_system.Plo
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.7.5'
gmake: *** [Makefile:32290: all-recursive] Error 1
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/math/libmesh