[package - main-armv7-default][science/rdkit] Failed for rdkit-2024.03.6_1 in build
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Date: Sat, 02 Nov 2024 04:06:18 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p711a2f7f1ca4_s0d965bc034/logs/rdkit-2024.03.6_1.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p711a2f7f1ca4_s0d965bc034
Log:
=>> Building science/rdkit
build started at Sat Nov 2 04:05:48 UTC 2024
port directory: /usr/ports/science/rdkit
package name: rdkit-2024.03.6_1
building for: FreeBSD main-armv7-default-job-13 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 3121 Oct 6 01:01 /usr/ports/science/rdkit/Makefile
Ports top last git commit: 711a2f7f1ca
Ports top unclean checkout: no
Port dir last git commit: 55cfbcf56c3
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500026
Job Id: 13
!!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500026
UNAME_v=FreeBSD 15.0-CURRENT 1500026
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
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LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
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POUDRIERE_PKGNAME=poudriere-git-3.4.2
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for rdkit-2024.03.6_1:
DOCS=on: Build and/or install documentation
PGSQL=off: Build the PostgreSQL cartridge
PYTHON=on: Python bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_I
NSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
SHLIB_VER=2024.03.6 PORTDOCS="" DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit"
--End PLIST_SUB--
--SUB_LIST--
DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> rdkit-2024.03.6_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-armv7-default-job-13] Installing pkg-1.21.3...
[main-armv7-default-job-13] Extracting pkg-1.21.3: .......... done
===> rdkit-2024.03.6_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of rdkit-2024.03.6_1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by rdkit-2024.03.6_1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by rdkit-2024.03.6_1 for building
=> SHA256 Checksum OK for rdkit-2024.03.6/ComicNeue-Regular.ttf.
=> SHA256 Checksum OK for rdkit-2024.03.6/rdkit-rdkit-Release_2024_03_6_GH0.tar.gz.
=> SHA256 Checksum OK for rdkit-2024.03.6/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by rdkit-2024.03.6_1 for building
===> Extracting for rdkit-2024.03.6_1
=> SHA256 Checksum OK for rdkit-2024.03.6/ComicNeue-Regular.ttf.
=> SHA256 Checksum OK for rdkit-2024.03.6/rdkit-rdkit-Release_2024_03_6_GH0.tar.gz.
=> SHA256 Checksum OK for rdkit-2024.03.6/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for rdkit-2024.03.6_1
===> Applying FreeBSD patches for rdkit-2024.03.6_1 from /usr/ports/science/rdkit/files
===========================================================================
=======================<phase: build-depends >============================
<snip>
[main-armv7-default-job-13] `-- Installing jsoncpp-1.9.6_1...
[main-armv7-default-job-13] `-- Extracting jsoncpp-1.9.6_1: .......... done
[main-armv7-default-job-13] `-- Installing libuv-1.49.1...
[main-armv7-default-job-13] `-- Extracting libuv-1.49.1: .......... done
[main-armv7-default-job-13] `-- Installing rhash-1.4.4_1...
[main-armv7-default-job-13] `-- Extracting rhash-1.4.4_1: .......... done
[main-armv7-default-job-13] Extracting cmake-core-3.30.5: .......... done
===> rdkit-2024.03.6_1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of rdkit-2024.03.6_1
===> rdkit-2024.03.6_1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,4.pkg
[main-armv7-default-job-13] Installing ninja-1.11.1,4...
[main-armv7-default-job-13] Extracting ninja-1.11.1,4: ........ done
===> rdkit-2024.03.6_1 depends on executable: ninja - found
===> Returning to build of rdkit-2024.03.6_1
===> rdkit-2024.03.6_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found
===> Installing existing package /packages/All/eigen-3.4.0_3.pkg
[main-armv7-default-job-13] Installing eigen-3.4.0_3...
[main-armv7-default-job-13] `-- Installing blas-3.12.0_1...
[main-armv7-default-job-13] `-- Extracting blas-3.12.0_1: ........ done
[main-armv7-default-job-13] `-- Installing lapack-3.12.0_2...
[main-armv7-default-job-13] `-- Extracting lapack-3.12.0_2: .......... done
[main-armv7-default-job-13] Extracting eigen-3.4.0_3: .......... done
===> rdkit-2024.03.6_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===> Returning to build of rdkit-2024.03.6_1
===> rdkit-2024.03.6_1 depends on file: /usr/local/bin/python3.11 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> rdkit-2024.03.6_1 depends on shared library: libboost_system.so - not found
===> Installing existing package /packages/All/boost-libs-1.85.0.pkg
[main-armv7-default-job-13] Installing boost-libs-1.85.0...
[main-armv7-default-job-13] `-- Installing icu-74.2_1,1...
[main-armv7-default-job-13] `-- Extracting icu-74.2_1,1: .......... done
[main-armv7-default-job-13] Extracting boost-libs-1.85.0: .......... done
=====
Message from boost-libs-1.85.0:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> rdkit-2024.03.6_1 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so)
===> Returning to build of rdkit-2024.03.6_1
===> rdkit-2024.03.6_1 depends on shared library: libcoordgen.so - not found
===> Installing existing package /packages/All/coordgenlibs-3.0.2.pkg
[main-armv7-default-job-13] Installing coordgenlibs-3.0.2...
[main-armv7-default-job-13] `-- Installing maeparser-1.3.1_4...
[main-armv7-default-job-13] `-- Extracting maeparser-1.3.1_4: .......... done
[main-armv7-default-job-13] Extracting coordgenlibs-3.0.2: .......... done
===> rdkit-2024.03.6_1 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so)
===> Returning to build of rdkit-2024.03.6_1
===> rdkit-2024.03.6_1 depends on shared library: libfreetype.so - not found
===> Installing existing package /packages/All/freetype2-2.13.3.pkg
[main-armv7-default-job-13] Installing freetype2-2.13.3...
[main-armv7-default-job-13] `-- Installing brotli-1.1.0,1...
[main-armv7-default-job-13] `-- Extracting brotli-1.1.0,1: .......... done
[main-armv7-default-job-13] `-- Installing png-1.6.44...
[main-armv7-default-job-13] `-- Extracting png-1.6.44: .......... done
[main-armv7-default-job-13] Extracting freetype2-2.13.3: .......... done
=====
Message from freetype2-2.13.3:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
===> rdkit-2024.03.6_1 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so)
===> Returning to build of rdkit-2024.03.6_1
===> rdkit-2024.03.6_1 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so)
===> rdkit-2024.03.6_1 depends on shared library: libboost_python311.so - not found
===> Installing existing package /packages/All/py311-boost-libs-1.85.0.pkg
[main-armv7-default-job-13] Installing py311-boost-libs-1.85.0...
[main-armv7-default-job-13] Extracting py311-boost-libs-1.85.0: .......... done
=====
Message from py311-boost-libs-1.85.0:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> rdkit-2024.03.6_1 depends on shared library: libboost_python311.so - found (/usr/local/lib/libboost_python311.so)
===> Returning to build of rdkit-2024.03.6_1
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for rdkit-2024.03.6_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/rdkit/work/.build
-- The C compiler identification is Clang 19.1.2
-- The CXX compiler identification is Clang 19.1.2
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning at /usr/local/share/cmake/Modules/FetchContent.cmake:2111 (message):
FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source
directory for dependency Catch2 to already be populated. This generally
means it must not be set to true the first time CMake is run in a build
directory. The following source directory should already be populated, but
it doesn't exist:
/wrkdirs/usr/ports/science/rdkit/work/.build/_deps/catch2-src
Policy CMP0170 controls enforcement of this requirement.
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FetchContent.cmake:2384 (__FetchContent_Populate)
CMakeLists.txt:163 (FetchContent_MakeAvailable)
-- Found Python3: /usr/local/bin/python3.11 (found version "3.11.10") found components: Interpreter Development NumPy Development.Module Development.Embed
Python Install directory /usr/local/lib/python3.11/site-packages
nbval not found, disabling the jupyter tests
-- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
== Using strict rotor definition
-- maeparser include dir set as '/usr/local/include'
-- maeparser libraries set as '/usr/local/lib/libmaeparser.so'
-- coordgen include dir set as /usr/local/include
-- coordgen libraries set as '/usr/local/lib/libcoordgen.so'
-- Found RingDecomposerLib source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib
-- Found Python3: /usr/local/bin/python3.11 (found version "3.11.10") found components: Interpreter
/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/Data/Fonts/ComicNeue-Regular.ttf already there, skipping the download
-- Found Freetype: /usr/local/lib/libfreetype.so (found version "2.13.3")
-- Found RapidJSON source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External
-- Configuring done (6.3s)
-- Generating done (1.6s)
CMake Warning:
Manually-specified variables were not used by the project:
BOOST_PYTHON_SUFFIX
CATCH_DIR
CMAKE_COLOR_MAKEFILE
CMAKE_VERBOSE_MAKEFILE
Python_ADDITIONAL_VERSIONS
Python_EXECUTABLE
RDK_OPTIMIZE_NATIVE
-- Build files have been written to: /wrkdirs/usr/ports/science/rdkit/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for rdkit-2024.03.6_1
[ 0% 3/647] cd /wrkdirs/usr/ports/science/rdkit/work/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/INCHI-API/python/noinchi.py /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/rdkit/Chem/inchi.py
[ 0% 4/647] /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdCoordGen_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/Code -isystem /usr/local/include -isystem /usr/l
ocal/include/python3.11 -isystem /usr/local/include/eigen3 -isystem /usr -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -MF External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o.d -o External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/CoordGen/Wrap/rdCoordGen.cpp
FAILED: External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o
/usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdCoordGen_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/Code -isystem /usr/local/include -isystem /usr/local/include/
python3.11 -isystem /usr/local/include/eigen3 -isystem /usr -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -MF External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o.d -o External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/CoordGen/Wrap/rdCoordGen.cpp
c++: error: unsupported option '-mpopcnt' for target 'armv7-unknown-freebsd15.0-gnueabihf'
[ 0% 4/647] /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.11 -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/Code -isystem /usr/local/include/eigen3 -isystem /usr/local/include -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict
-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c
[ 0% 4/647] /usr/bin/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.11 -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/Code -isystem /usr/local/include/eigen3 -isystem /usr/local/include -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict
-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2024_03_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/science/rdkit