[package - 140i386-default][biology/cytoscape] Failed for cytoscape-3.6.1 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Sun, 26 May 2024 01:11:37 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy21/data/140i386-default/d65a728b53a9/logs/cytoscape-3.6.1.log
Build URL: https://pkg-status.freebsd.org/beefy21/build.html?mastername=140i386-default&build=d65a728b53a9
Log:
=>> Building biology/cytoscape
build started at Sun May 26 01:08:03 UTC 2024
port directory: /usr/ports/biology/cytoscape
package name: cytoscape-3.6.1
building for: FreeBSD 140i386-default-job-42 14.0-RELEASE-p6 FreeBSD 14.0-RELEASE-p6 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 2461 May 21 01:01 /usr/ports/biology/cytoscape/Makefile
Ports top last git commit: d65a728b5
Ports top unclean checkout: no
Port dir last git commit: a40e26254
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500018
Jail OSVERSION: 1400097
Job Id: 42
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1400097
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=14.0-RELEASE-p6
LOCALBASE=/usr/local
UNAME_v=FreeBSD 14.0-RELEASE-p6
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-30-g79e3edcd
MASTERMNT=/usr/local/poudriere/data/.m/140i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/140i386-default/42/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=140i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/140i386-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install
-m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cytoscape" EXAMPLESDIR="share/examples/cytoscape" DATADIR="share/cytoscape" WWWDIR="www/cytoscape" ETCDIR="etc/cytoscape"
--End PLIST_SUB--
--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[140i386-default-job-42] Installing pkg-1.21.3...
[140i386-default-job-42] Extracting pkg-1.21.3: .......... done
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cytoscape-3.6.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===> Extracting for cytoscape-3.6.1
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for cytoscape-3.6.1
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cytoscape-3.6.1 depends on package: maven363>0 - not found
===> Installing existing package /packages/All/maven363-3.6.3.pkg
[140i386-default-job-42] Installing maven363-3.6.3...
[140i386-default-job-42] `-- Installing maven-wrapper-2...
[140i386-default-job-42] `-- Extracting maven-wrapper-2: ... done
[140i386-default-job-42] `-- Installing openjdk8-8.412.08.1...
[140i386-default-job-42] | `-- Installing alsa-lib-1.2.11...
<snip>
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData
[INFO] Building zip: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-windows-3.6.1.zip
[INFO]
[INFO] ---------------< org.cytoscape.app-developer:cytoscape >----------------
[INFO] Building Distribution 3.6.1 [116/117]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- maven-dependency-plugin:2.2:unpack (unpack-cytoscape) @ cytoscape ---
[INFO] Configured Artifact: org.cytoscape.distribution:cytoscape:3.6.1:tar.gz
[INFO] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp with includes and excludes
[INFO] Expanding: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz into /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp
[INFO]
[INFO] --- maven-dependency-plugin:2.2:unpack (unpack-javadoc) @ cytoscape ---
[INFO] Configured Artifact: org.cytoscape:swing-app-api:javadoc:3.6.1:jar
[INFO] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-javadoc.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/API with includes and excludes
[INFO]
[INFO] --- maven-dependency-plugin:2.2:copy (copy) @ cytoscape ---
[INFO] Configured Artifact: org.cytoscape:swing-app-api:jar-with-dependencies:3.6.1:jar
[INFO] Configured Artifact: org.cytoscape:api-parent:sources:3.6.1:jar
[INFO] Configured Artifact: org.cytoscape:impl-parent:sources:3.6.1:jar
[INFO] Copying swing-app-api-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/cytoscape-swing-app-api-3.6.1.jar
[INFO] Copying api-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/api-3.6.1-sources.jar
[INFO] Copying impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/impl-3.6.1-sources.jar
[INFO]
[INFO] --- maven-resources-plugin:2.5:copy-resources (copy-unzipped-dir) @ cytoscape ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 241 resources
[INFO]
[INFO] --- maven-antrun-plugin:1.6:run (fix-permissions) @ cytoscape ---
[WARNING] Parameter tasks is deprecated, use target instead
[INFO] Executing tasks
main:
[INFO] Executed tasks
[INFO]
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cytoscape >>>
[INFO]
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cytoscape <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cytoscape ---
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (clean-temporary-directory) @ cytoscape ---
[INFO] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp (includes = [], excludes = [])
[INFO] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/dependency-maven-plugin-markers (includes = [], excludes = [])
[INFO] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/antrun (includes = [], excludes = [])
[INFO]
[INFO] --- maven-install-plugin:2.4:install (default-install) @ cytoscape ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-developer/cytoscape/3.6.1/cytoscape-3.6.1.pom
[INFO]
[INFO] -----------------------< org.cytoscape:project >------------------------
[INFO] Building Cytoscape Project POM 3.6.1 [117/117]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- maven-install-plugin:2.4:install (default-install) @ project ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/project/3.6.1/project-3.6.1.pom
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Cytoscape Project POM 3.6.1:
[INFO]
[INFO] Basic Cytoscape POM Configuration .................. SUCCESS [ 0.173 s]
[INFO] Cytoscape API Parent Project POM ................... SUCCESS [ 3.054 s]
[INFO] Cytoscape Documentation Taglets .................... SUCCESS [ 0.888 s]
[INFO] Cytoscape Event API (event-api) .................... SUCCESS [ 1.436 s]
[INFO] Cytoscape Model API (model-api) .................... SUCCESS [ 0.707 s]
[INFO] Cytoscape Service API (service-api) ................ SUCCESS [ 0.560 s]
[INFO] Cytoscape View Model API (viewmodel-api) ........... SUCCESS [ 0.480 s]
[INFO] Cytoscape CI API (ci-api) .......................... SUCCESS [ 0.510 s]
[INFO] Cytoscape Work API (work-api) ...................... SUCCESS [ 0.596 s]
[INFO] Cytoscape Presentation API (presentation-api) ...... SUCCESS [ 0.557 s]
[INFO] Cytoscape Application API (application-api) ........ SUCCESS [ 0.402 s]
[INFO] Cytoscape Property API (property-api) .............. SUCCESS [ 0.363 s]
[INFO] Cytoscape VizMap API (vizmap-api) .................. SUCCESS [ 0.327 s]
[INFO] Cytoscape Session API (session-api) ................ SUCCESS [ 0.351 s]
[INFO] Cytoscape Filter API (filter-api) .................. SUCCESS [ 0.437 s]
[INFO] Cytoscape IO API (io-api) .......................... SUCCESS [ 0.432 s]
[INFO] Cytoscape Core Task API (core-task-api) ............ SUCCESS [ 0.524 s]
[INFO] Cytoscape Equations API (equations-api) ............ SUCCESS [ 0.405 s]
[INFO] Cytoscape Layout API (layout-api) .................. SUCCESS [ 0.413 s]
[INFO] Cytoscape Groups API (group-api) ................... SUCCESS [ 0.366 s]
[INFO] Cytoscape Groups API (jobs-api) .................... SUCCESS [ 0.297 s]
[INFO] Cytoscape Webservice API (webservice-api) .......... SUCCESS [ 0.320 s]
[INFO] Cytoscape Data Source API (datasource-api) ......... SUCCESS [ 0.352 s]
[INFO] Cytoscape Command Executor API (command-executor-api) SUCCESS [ 0.263 s]
[INFO] Cytoscape App API (app-api) ........................ SUCCESS [ 2.506 s]
[INFO] Cytoscape Work Swing API (work-swing-api) .......... SUCCESS [ 0.582 s]
[INFO] Cytoscape Swing Application API (swing-application-api) SUCCESS [ 0.394 s]
[INFO] Cytoscape VizMap GUI API (vizmap-gui-api) .......... SUCCESS [ 0.278 s]
[INFO] Cytoscape Swing Utility API (swing-util-api) ....... SUCCESS [ 0.597 s]
[INFO] Cytoscape Webservice Swing API (webservice-swing-api) SUCCESS [ 0.268 s]
[INFO] Cytoscape Swing App API (swing-app-api) ............ SUCCESS [ 15.029 s]
[INFO] Cytoscape Util API (util-api) ...................... SUCCESS [ 0.245 s]
[INFO] Cytoscape API (api-bundle) ......................... SUCCESS [ 0.872 s]
[INFO] Cytoscape Implementation Parent Project POM ........ SUCCESS [ 1.404 s]
[INFO] Cytoscape Equations Impl (equations-impl) .......... SUCCESS [ 0.873 s]
[INFO] Cytoscape Model Impl Parent (model-impl-parent) .... SUCCESS [ 1.621 s]
[INFO] Cytoscape Model Impl (model-impl) .................. SUCCESS [ 1.006 s]
[INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [ 0.643 s]
[INFO] Cytoscape Ding Impl Parent (ding-impl) ............. SUCCESS [ 1.493 s]
[INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [ 3.782 s]
[INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [ 1.390 s]
[INFO] Cytoscape View Model Impl (viewmodel-impl) ......... SUCCESS [ 0.347 s]
[INFO] Cytoscape Groups Impl (group-impl) ................. SUCCESS [ 0.897 s]
[INFO] Cytoscape Event Impl Parent (event-impl-parent) .... SUCCESS [ 1.440 s]
[INFO] Cytoscape Event Impl (event-impl) .................. SUCCESS [ 0.281 s]
[INFO] Cytoscape Filters Impl (filter-impl) ............... SUCCESS [ 0.784 s]
[INFO] Cytoscape Filters 2 Impl (filter2-impl) ............ SUCCESS [ 1.589 s]
[INFO] Cytoscape IO Impl Parent (io-impl-parent) .......... SUCCESS [ 1.519 s]
[INFO] Cytoscape IO Impl (io-impl) ........................ SUCCESS [ 1.580 s]
[INFO] Cytoscape Layout Impl (layout-impl) ................ SUCCESS [ 0.320 s]
[INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [ 4.708 s]
[INFO] Cytoscape Editor Impl (editor-impl) ................ SUCCESS [ 0.675 s]
[INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [ 0.604 s]
[INFO] Cytoscape GraphML Impl (graphml-impl) .............. SUCCESS [ 0.470 s]
[INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [ 3.331 s]
[INFO] Cytoscape Jobs Impl (jobs-impl) .................... SUCCESS [ 0.584 s]
[INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [ 0.924 s]
[INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) .. SUCCESS [ 0.283 s]
[INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [ 0.498 s]
[INFO] Cytoscape Linkout Impl (linkout-impl) .............. SUCCESS [ 0.302 s]
[INFO] Cytoscape Log Swing Impl (log-swing-impl) .......... SUCCESS [ 0.389 s]
[INFO] Cytoscape Manual Layout Impl (manual-layout-impl) .. SUCCESS [ 0.417 s]
[INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [ 1.218 s]
[INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [ 1.267 s]
[INFO] Cytoscape App Impl (app-impl) ...................... SUCCESS [ 1.078 s]
[INFO] Cytoscape Presentation Impl (presentation-impl) .... SUCCESS [ 0.284 s]
[INFO] Cytoscape Property Impl (property-impl) ............ SUCCESS [ 0.311 s]
[INFO] Cytoscape Search Impl (search-impl) ................ SUCCESS [ 0.337 s]
[INFO] Cytoscape Session Impl (session-impl) .............. SUCCESS [ 0.309 s]
[INFO] Cytoscape Swing Utility Impl (swing-util-impl) ..... SUCCESS [ 0.500 s]
[INFO] Cytoscape Swing Application Impl (swing-application-impl) SUCCESS [ 2.361 s]
[INFO] Cytoscape Table Browser Impl (table-browser-impl) .. SUCCESS [ 0.844 s]
[INFO] Cytoscape Table Import Impl (table-import-impl) .... SUCCESS [ 5.192 s]
[INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SUCCESS [ 0.379 s]
[INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ........ SUCCESS [ 1.547 s]
[INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) .. SUCCESS [ 1.511 s]
[INFO] Cytoscape VizMap Impl (vizmap-impl) ................ SUCCESS [ 0.574 s]
[INFO] Cytoscape Webservice Impl (webservice-impl) ........ SUCCESS [ 0.376 s]
[INFO] org.cytoscape.work-headless-impl ................... SUCCESS [ 0.238 s]
[INFO] org.cytoscape.work-impl ............................ SUCCESS [ 0.340 s]
[INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SUCCESS [ 1.462 s]
[INFO] Cytoscape Work Swing Impl (work-swing-impl) ........ SUCCESS [ 0.760 s]
[INFO] Cytoscape Application Impl (application-impl) ...... SUCCESS [ 0.400 s]
[INFO] Cytoscape Datasource Impl (datasource-impl) ........ SUCCESS [ 0.377 s]
[INFO] Cytoscape Support Parent Project POM ............... SUCCESS [ 0.007 s]
[INFO] Cytoscape Launch Framework ......................... SUCCESS [ 0.006 s]
[INFO] CommandLine Provider ............................... SUCCESS [ 0.118 s]
[INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SUCCESS [ 0.326 s]
[INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) .... SUCCESS [ 0.272 s]
[INFO] Cytoscape Scripting Impl (scripting-impl) .......... SUCCESS [ 0.389 s]
[INFO] Cytoscape Core Task Impl (core-task-impl) .......... SUCCESS [ 2.170 s]
[INFO] Cytoscape Headless Application Impl (headless-application-impl) SUCCESS [ 0.289 s]
[INFO] org.cytoscape.cy-commons-cli ....................... SUCCESS [ 0.194 s]
[INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SUCCESS [ 0.267 s]
[INFO] Cytoscape 3 App Archetypes Parent .................. SUCCESS [ 0.109 s]
[INFO] Cytoscape 3 Archetype - Creates an App providing public API SUCCESS [ 0.251 s]
[INFO] Cytoscape 3 Archetype - Creates an App with a Task . SUCCESS [ 0.028 s]
[INFO] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application SUCCESS [ 0.020 s]
[INFO] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps SUCCESS [ 0.015 s]
[INFO] org.cytoscape.integration-test-support ............. SUCCESS [ 0.117 s]
[INFO] Launcher ........................................... SUCCESS [ 0.436 s]
[INFO] StartLevel Assembly ................................ SUCCESS [ 0.019 s]
[INFO] Tasks for Testing .................................. SUCCESS [ 0.181 s]
[INFO] Cytoscape Desktop Application Distribution ......... SUCCESS [ 0.004 s]
[INFO] Cytoscape Third-Party Dependencies (third-party) ... SUCCESS [ 49.834 s]
[INFO] SplashScreen Launcher .............................. SUCCESS [ 1.972 s]
[INFO] Cytoscape Launcher ................................. SUCCESS [ 0.230 s]
[INFO] Splash Updater ..................................... SUCCESS [ 0.384 s]
[INFO] Cytoscape Command Line Provider Implementation ..... SUCCESS [ 0.173 s]
[INFO] Cytoscape Diagnostics .............................. SUCCESS [ 0.236 s]
[INFO] Cytoscape Branding ................................. SUCCESS [ 0.146 s]
[INFO] Cytoscape Application Implementation Metadata ...... SUCCESS [ 0.165 s]
[INFO] Cytoscape GUI-Distribution Integration Test (integration-test) SUCCESS [ 0.359 s]
[INFO] Cytoscape Feature Repository ....................... SUCCESS [ 0.045 s]
[INFO] Cytoscape Karaf Distribution ....................... FAILURE [ 19.463 s]
[INFO] Distribution ....................................... SUCCESS [ 12.086 s]
[INFO] Cytoscape Project POM .............................. SUCCESS [ 0.020 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 03:02 min
[INFO] Finished at: 2024-05-26T01:11:35Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-assembly-plugin:2.5.5:single (windows-bin) on project cytoscape: Failed to create assembly: Error creating assembly archive windows: Problem creating zip: Execution exception: Java heap space -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <args> -rf org.cytoscape.distribution:cytoscape
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/cytoscape