From nobody Tue Jun 25 02:04:29 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4W7SnW2B0Lz5Q7Yk for ; Tue, 25 Jun 2024 02:04:31 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4W7SnT6KVRz4YW3 for ; Tue, 25 Jun 2024 02:04:29 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1719281069; a=rsa-sha256; cv=none; b=UDsEe4llQ/YsowT/gxD1IELqFdcLGvW/75YbDazzKUPzDzGOI8uUCUbeNcA2xvtsfpHUX8 a4j0+i5ur1IIB3g5McXpoKwinjl0pEV44FiKwEk6D/CzFfgQZkMoadwC6XlKNXDqVDj3Sl BR0bLl4P0YEuH3zNhrNemc/M8NMv4+dYez3rooUrfQho9bbNg00xWKwQKuVT49wZ4J2CDI scfiKuQ0M/P7NR0QAj3C4Cqy90HnuKDsbl2U6XHEH/Whb9n8KOehGk4Ng/DBJXCnVpdcAk 1Codv9Kd2f0ziVe7ZgPbdc3uTdD1/dskNJOcrs0wf6oQbOF2+r97sgVaQcwq+A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1719281069; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=1QnbZ0niQ2e6gJmgNBrPICFi7o3+EmxEIij1EUt39fQ=; b=YL9dq1v1o49H8Gh6ACTDXLkwCr/LPzwhRW7uCqNcrufJJJuAm6NJixGspEp+3t9NUmcL6b +8C1nG/B/lC1V7PuE4F9XTrYCIOmaTrdJo8g8hKSWDNZD0LXiOkUsq+c3lP6lDR466sXmf oxQ7rXdkbf69OCrBK1sU65BK5UXsRWr77uwmWOjtMqCZZAM/V3JFF8eRWLYAm9aIK52PnO 61c+3yurj2syaFiks5VNXSWwhwZT0c6PYxWNHFZSE3I+XZtIjomCe019+Z7d8ZHrFGoKvg qUQCb2k2K3BkEiCPTqUFihNlErEHB0BhIgYRcmuCNEHtk/dJoKJbwbzfI33E2g== Received: from package19.nyi.freebsd.org (package19.nyi.freebsd.org [IPv6:2610:1c1:1:607e::16:7]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4W7SnT5wx2zjXt for ; Tue, 25 Jun 2024 02:04:29 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1e93f by package19.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on package19.nyi.freebsd.org); Tue, 25 Jun 2024 02:04:29 +0000 To: jwb@FreeBSD.org Subject: [exp - 140amd64-default-build-as-user][biology/gcta] Failed for gcta-1.94.1_1 in checksum Cc: pkg-fallout@FreeBSD.org Date: Tue, 25 Jun 2024 02:04:29 +0000 Message-Id: <667a25ad.1e93f.61895699@package19.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/package19/data/140amd64-default-build-as-user/e67ab459cb8c/logs/gcta-1.94.1_1.log Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=140amd64-default-build-as-user&build=e67ab459cb8c Log: =>> Building biology/gcta build started at Tue Jun 25 02:04:27 UTC 2024 port directory: /usr/ports/biology/gcta package name: gcta-1.94.1_1 building for: FreeBSD 140amd64-default-build-as-user-job-11 14.0-RELEASE-p7 FreeBSD 14.0-RELEASE-p7 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1581 Dec 15 2023 /usr/ports/biology/gcta/Makefile Ports top last git commit: e67ab459cb8 Ports top unclean checkout: no Port dir last git commit: 3bf602d2a7d Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-30-g79e3edcd Host OSVERSION: 1500018 Jail OSVERSION: 1400097 Job Id: 11 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RELEASE-p7 UNAME_r=14.0-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-30-g79e3edcd MASTERMNT=/poudriere/data/.m/140amd64-default-build-as-user/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/poudriere/data/.m/140amd64-default-build-as-user/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/poudriere/data/.m/140amd64-default-build-as-user/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- EIGEN3_INCLUDE_DIR=/usr/local/include/eigen3 BOOST_INCLUDE_DIR=/usr/local/include/boost OPENBLAS=/usr/local SPECTRA_INCLUDE_DIR=/usr/local/include/Spectra XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gcta/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gcta/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gcta/work/.cache HOME=/wrkdirs/usr/ports/biology/gcta/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gcta/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gcta/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/gcta/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fopenmp -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict -aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gcta" EXAMPLESDIR="share/examples/gcta" DATADIR="share/gcta" WWWDIR="www/gcta" ETCDIR="etc/gcta" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gcta DOCSDIR=/usr/local/share/doc/gcta EXAMPLESDIR=/usr/local/share/examples/gcta WWWDIR=/usr/local/www/gcta ETCDIR=/usr/local/etc/gcta --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gcta-1.94.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [140amd64-default-build-as-user-job-11] Installing pkg-1.21.3... [140amd64-default-build-as-user-job-11] Extracting pkg-1.21.3: .......... done ===> gcta-1.94.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gcta-1.94.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.94.1_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by gcta-1.94.1_1 for building => SHA256 Checksum mismatch for jianyangqt-gcta-v1.94.1_GH0.tar.gz. => SHA256 Checksum OK for zhilizheng-plink-ng-3744540_GH0.tar.gz. ===> Refetch for 1 more times files: jianyangqt-gcta-v1.94.1_GH0.tar.gz ===> License GPLv3 accepted by the user => jianyangqt-gcta-v1.94.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/jianyangqt/gcta/tar.gz/v1.94.1?dummy=/jianyangqt-gcta-v1.94.1_GH0.tar.gz fetch: https://codeload.github.com/jianyangqt/gcta/tar.gz/v1.94.1?dummy=/jianyangqt-gcta-v1.94.1_GH0.tar.gz: size unknown fetch: https://codeload.github.com/jianyangqt/gcta/tar.gz/v1.94.1?dummy=/jianyangqt-gcta-v1.94.1_GH0.tar.gz: size of remote file is not known jianyangqt-gcta-v1.94.1_GH0.tar.gz 1075 kB 8939 kBps 00s => Fetched file size mismatch (expected 49152, actual 1101577) => Trying next site => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/jianyangqt-gcta-v1.94.1_GH0.tar.gz fetch: http://distcache.FreeBSD.org/ports-distfiles/jianyangqt-gcta-v1.94.1_GH0.tar.gz: size mismatch: expected 49152, actual 1101577 => Couldn't fetch it - please try to retrieve this => port manually into /portdistfiles/ and try again. *** Error code 1 Stop. make[1]: stopped in /usr/ports/biology/gcta *** Error code 1 Stop. make: stopped in /usr/ports/biology/gcta