[package - 132i386-default][science/tinker] Failed for tinker-8.11.2_3 in package
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Date: Fri, 07 Jun 2024 11:51:34 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy15/data/132i386-default/3905913943f0/logs/tinker-8.11.2_3.log
Build URL: https://pkg-status.freebsd.org/beefy15/build.html?mastername=132i386-default&build=3905913943f0
Log:
=>> Building science/tinker
build started at Fri Jun 7 11:46:49 UTC 2024
port directory: /usr/ports/science/tinker
package name: tinker-8.11.2_3
building for: FreeBSD 132i386-default-job-12 13.2-RELEASE-p11 FreeBSD 13.2-RELEASE-p11 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 2732 May 21 01:01 /usr/ports/science/tinker/Makefile
Ports top last git commit: 3905913943f
Ports top unclean checkout: no
Port dir last git commit: b079e7a87c8
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500018
Jail OSVERSION: 1302001
Job Id: 12
---Begin Environment---
SHELL=/bin/csh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1302001
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=13.2-RELEASE-p11
LOCALBASE=/usr/local
UNAME_v=FreeBSD 13.2-RELEASE-p11
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-30-g79e3edcd
MASTERMNT=/usr/local/poudriere/data/.m/132i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/132i386-default/12/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=132i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/132i386-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for tinker-8.11.2_3:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
NATIVE=off: Use native optimization (-march=native)
OPTIMIZED_FFLAGS=off: Fortran compilation optimizations
SIMD=off: Use CPU-specific optimizations
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/tinker/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/tinker/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/tinker/work/.cache HOME=/wrkdirs/usr/ports/science/tinker/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/tinker/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/tinker/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
HAVE_G2C=yes F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/tinker/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/tinker/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/tinker/work/.cache HOME=/wrkdirs/usr/ports/science/tinker/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/tinker/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/tinker/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP
="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/tinker" EXAMPLESDIR="share/examples/tinker" DATADIR="share/tinker" WWWDIR="www/tinker" ETCDIR="etc/tinker"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/tinker DOCSDIR=/usr/local/share/doc/tinker EXAMPLESDIR=/usr/local/share/examples/tinker WWWDIR=/usr/local/www/tinker ETCDIR=/usr/local/etc/tinker
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License TINKER accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> tinker-8.11.2_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[132i386-default-job-12] Installing pkg-1.21.3...
[132i386-default-job-12] Extracting pkg-1.21.3: .......... done
===> tinker-8.11.2_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of tinker-8.11.2_3
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License TINKER accepted by the user
=> tinker-8.11.2.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://dasher.wustl.edu/tinker/downloads/tinker-8.11.2.tar.gz
tinker-8.11.2.tar.gz 68 MB 10 MBps 06s
===> Fetching all distfiles required by tinker-8.11.2_3 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License TINKER accepted by the user
===> Fetching all distfiles required by tinker-8.11.2_3 for building
=> SHA256 Checksum OK for tinker-8.11.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License TINKER accepted by the user
===> Fetching all distfiles required by tinker-8.11.2_3 for building
===> Extracting for tinker-8.11.2_3
=> SHA256 Checksum OK for tinker-8.11.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for tinker-8.11.2_3
===> Applying FreeBSD patches for tinker-8.11.2_3 from /usr/ports/science/tinker/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> tinker-8.11.2_3 depends on executable: gfortran13 - not found
===> Installing existing package /packages/All/gcc13-13.2.0_4.pkg
[132i386-default-job-12] Installing gcc13-13.2.0_4...
[132i386-default-job-12] `-- Installing binutils-2.40_5,1...
[132i386-default-job-12] | `-- Installing gettext-runtime-0.22.5...
[132i386-default-job-12] | | `-- Installing indexinfo-0.3.1...
[132i386-default-job-12] | | `-- Extracting indexinfo-0.3.1: .... done
[132i386-default-job-12] | `-- Extracting gettext-runtime-0.22.5: .......... done
[132i386-default-job-12] | `-- Installing zstd-1.5.6...
[132i386-default-job-12] | | `-- Installing liblz4-1.9.4_1,1...
[132i386-default-job-12] | | `-- Extracting liblz4-1.9.4_1,1: .......... done
<snip>
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/linaclotide.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lipid.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lipid.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lj38.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lj38.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lysozyme.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lysozyme.pdb): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lysozyme.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/lysozyme.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/melittin.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/melittin.pdb): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/melittin.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/melittin.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/membrane.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/membrane.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/meohbox.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/meohbox.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/methane.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/methane.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/methane.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/methanol.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/methanol.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/mgwater.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/mgwater.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/mm3.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/mm3.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nacl.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nacl.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nada.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nada.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/naphthalene.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/naphthalene.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/naphthalene.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/naphthax.frac): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/naphthax.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/naphthax.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nitrate.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nitrate.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nitrile.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nitrile.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nitrogen.dyn): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nitrogen.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nitrogen.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nma.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nma.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nma.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nmabox.dyn): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nmabox.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nmabox.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nmf.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nmf.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nstilbene.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nstilbene.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/nstilbene.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octane.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octane.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octane.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octane2.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octane2.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octane2.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octene.dyn): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octene.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/octene.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/palmitate.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/palmitate.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/palmitate.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pentane.frac): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pentane.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pentane.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/peptide.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/peptide.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/peptide.make): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/peptide.pdb): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/peptide.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/peptide.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/phenanth.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/phenanth.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/photo.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/photo.pdb): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/photo.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/photo.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pol3.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pol3.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/polyala.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/polyala.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pravastatin.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pravastatin.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/prism.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/prism.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/propane.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/propane.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/propellane.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/propellane.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/propellane.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/propyne.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/propyne.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pyridine.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pyridine.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pyridine.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pyrrole.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pyrrole.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/pyrrole.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/retinoic.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/retinoic.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ring.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ring.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/skunk.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/skunk.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/somatostatin.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/somatostatin.pdb): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/somatostatin.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/somatostatin.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/spc.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/spc.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/sterol.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/sterol.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/styrene.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/styrene.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/styrene.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/taxol.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/taxol.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/terphenyl.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/terphenyl.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tfe.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tfe.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thiadiene.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thiadiene.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thiadiene.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thiophene.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thiophene.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thiophene.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thr.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thr.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/thr.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip3f.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip3f.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip3p.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip3p.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip4f.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip4f.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip4p.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip4p.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip4pbox.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip4pbox.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip5p.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/tip5p.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/toradol.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/toradol.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/trpcage.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/trpcage.pdb): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/trpcage.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/trpcage.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/uamoeba.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/uamoeba.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ubiquitin.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ubiquitin.pdb): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ubiquitin.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ubiquitin.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ubiquitin2.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ubiquitin2.seq): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/ubiquitin2.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/urea.frac): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/urea.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/urea.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/water.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/water.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/water.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterball.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterball.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterbig.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterbig.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterbox.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterbox.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterdodec.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterdodec.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterdot.dyn): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterdot.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterdot.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterglobe.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterglobe.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterhuge.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterhuge.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterslab.dyn): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterslab.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/waterslab.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/watersmall.dyn): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/watersmall.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/watersmall.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/watertiny.dyn): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/watertiny.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/watertiny.xyz): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/white.int): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/white.key): No such file or directory
pkg-static: lstat(/wrkdirs/usr/ports/science/tinker/work/stage/usr/local/share/examples/tinker/white.xyz): No such file or directory
make: exec(/bin/sh) failed (No such file or directory)
*** Error code 1
Stop.
make: stopped in /usr/ports/science/tinker
unlink: ../../ref/.p/var/run/12_nohang.pid: Not a directory