[package - 140amd64-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-28.0.4 in build
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Date: Thu, 06 Jun 2024 17:27:58 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy22/data/140amd64-default/3905913943f0/logs/ncbi-cxx-toolkit-28.0.4.log
Build URL: https://pkg-status.freebsd.org/beefy22/build.html?mastername=140amd64-default&build=3905913943f0
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Thu Jun 6 13:41:38 UTC 2024
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-28.0.4
building for: FreeBSD 140amd64-default-job-10 14.0-RELEASE-p6 FreeBSD 14.0-RELEASE-p6 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1674 May 21 01:01 /usr/ports/biology/ncbi-cxx-toolkit/Makefile
Ports top last git commit: 390591394
Ports top unclean checkout: no
Port dir last git commit: a40e26254
Port dir unclean checkout: no
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Host OSVERSION: 1500018
Jail OSVERSION: 1400097
Job Id: 10
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--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
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PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
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GID=0
UID=0
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---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
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max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-28.0.4 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[140amd64-default-job-10] Installing pkg-1.21.3...
[140amd64-default-job-10] Extracting pkg-1.21.3: .......... done
===> ncbi-cxx-toolkit-28.0.4 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-28.0.4
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-28.0.4 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-28.0.4 for building
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-28.0.4_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-28.0.4 for building
===> Extracting for ncbi-cxx-toolkit-28.0.4
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-28.0.4_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for ncbi-cxx-toolkit-28.0.4
===> Applying FreeBSD patches for ncbi-cxx-toolkit-28.0.4 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-28.0.4 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[140amd64-default-job-10] Installing gmake-4.4.1...
[140amd64-default-job-10] `-- Installing gettext-runtime-0.22.5...
[140amd64-default-job-10] | `-- Installing indexinfo-0.3.1...
[140amd64-default-job-10] | `-- Extracting indexinfo-0.3.1: .... done
[140amd64-default-job-10] `-- Extracting gettext-runtime-0.22.5: .......... done
[140amd64-default-job-10] Extracting gmake-4.4.1: .......... done
===> ncbi-cxx-toolkit-28.0.4 depends on package: gmake>=4.4.1 - found
===> Returning to build of ncbi-cxx-toolkit-28.0.4
===> ncbi-cxx-toolkit-28.0.4 depends on file: /usr/local/bin/python3.11 - not found
===> Installing existing package /packages/All/python311-3.11.9.pkg
[140amd64-default-job-10] Installing python311-3.11.9...
[140amd64-default-job-10] `-- Installing libffi-3.4.6...
[140amd64-default-job-10] `-- Extracting libffi-3.4.6: .......... done
[140amd64-default-job-10] `-- Installing mpdecimal-4.0.0...
[140amd64-default-job-10] `-- Extracting mpdecimal-4.0.0: .......... done
[140amd64-default-job-10] `-- Installing readline-8.2.10...
[140amd64-default-job-10] `-- Extracting readline-8.2.10: .......... done
[140amd64-default-job-10] Extracting python311-3.11.9: .......... done
=====
Message from python311-3.11.9:
--
Note that some standard Python modules are provided as separate ports
<snip>
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Stop(move(stop)),
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_ServerSide(move(server_side))
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward<TArgs>(args)...), m_Filter(move(filter)) {}
^
std::
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.cpp:31:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.hpp:34:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.hpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.hpp:39:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.cpp:31:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.hpp:34:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.hpp:169:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Reader = move(reader);
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.hpp:194:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Writer = move(writer);
^
std::
10 warnings generated.
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/netstorage.cpp:34:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.hpp:33:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/services/impl/netstorage_impl.hpp:38:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/services/netstorage.hpp:40:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/services/srv_connections.hpp:37:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Start(move(start)),
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Stop(move(stop)),
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_ServerSide(move(server_side))
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward<TArgs>(args)...), m_Filter(move(filter)) {}
^
std::
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/netstorage.cpp:34:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.hpp:34:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.hpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.hpp:39:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/netstorage.cpp:34:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.hpp:34:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.hpp:169:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Reader = move(reader);
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.hpp:194:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Writer = move(writer);
^
std::
10 warnings generated.
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.hpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/misc/netstorage/netstorage.hpp:37:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/services/netstorage.hpp:40:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/services/srv_connections.hpp:37:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Start(move(start)),
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_Stop(move(stop)),
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
m_ServerSide(move(server_side))
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward<TArgs>(args)...), m_Filter(move(filter)) {}
^
std::
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.cpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.hpp:39:
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
: m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {}
^
std::
8 warnings generated.
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/netstorage.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include -DNCBI_BUILD_SESSION_ID=a71077a3-240a-11ef-9f27-a036bc746b37 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/state.cpp -o state.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include -DNCBI_BUILD_SESSION_ID=a71077a3-240a-11ef-9f27-a036bc746b37 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/object.cpp -o object.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include -DNCBI_BUILD_SESSION_ID=a71077a3-240a-11ef-9f27-a036bc746b37 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/netstorage.cpp -o netstorage.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include -DNCBI_BUILD_SESSION_ID=a71077a3-240a-11ef-9f27-a036bc746b37 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/netstorage/filetrack.cpp -o filetrack.o
/bin/rm -f libnetstorage.a .libnetstorage.a.stamp
ar cr libnetstorage.a state.o object.o netstorage.o filetrack.o
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/scripts/common/impl/if_diff.sh /bin/ln -f libnetstorage.a /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/lib
/bin/ln -f libnetstorage.a /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/lib/libnetstorage.a
/bin/ln -f .netstorage.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/status/.netstorage.dep
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage'
/usr/local/bin/gmake -C test all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage/test'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage/test'
gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage/test'
NOTE: skipping project "test_netstorage" due to unmet requirements
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage/test'
gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage/test'
NOTE: skipping project "test_netstorage" due to unmet requirements
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage/test'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/netstorage'
/usr/local/bin/gmake -C jsonwrapp all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp'
/usr/local/bin/gmake -C test all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp/test'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp/test'
gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp/test'
NOTE: skipping project "test_jsonwrapp" due to unmet requirements
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp/test'
gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp/test'
NOTE: skipping project "test_jsonwrapp" due to unmet requirements
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp/test'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/jsonwrapp'
/usr/local/bin/gmake -C biosample_util all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/biosample_util'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util TMPL=biosample_util export-headers
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/biosample_util'
gmake[4]: Nothing to be done for 'export-headers'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/biosample_util'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util TMPL=biosample_util flag-stamps
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/biosample_util'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/biosample_util'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util TMPL=biosample_util all
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util/biosample_util.cpp:1536:21: warning: loop variable 'pDiff' creates a copy from type 'const ncbi::CRef<ncbi::objects::biosample_util::CBiosampleFieldDiff, ncbi::CObjectCounterLocker>' [-Wrange-loop-construct]
for (const auto pDiff: diffs) {
^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util/biosample_util.cpp:1536:10: note: use reference type 'const ncbi::CRef<ncbi::objects::biosample_util::CBiosampleFieldDiff, ncbi::CObjectCounterLocker> &' to prevent copying
for (const auto pDiff: diffs) {
^~~~~~~~~~~~~~~~~
&
1 warning generated.
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/build/misc/biosample_util'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util/biosample_util.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util/struc_table_column.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/Clang1606-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/include -DNCBI_BUILD_SESSION_ID=a71077a3-240a-11ef-9f27-a036bc746b37 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-28.0.4/src/misc/biosample_util/biosample_util.cpp -o biosample_util.o
Killed