From nobody Mon Jun 03 13:53:40 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VtFYx0wXqz5MY7l for ; Mon, 03 Jun 2024 13:53:41 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VtFYw6D4fz4jRv for ; Mon, 3 Jun 2024 13:53:40 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1717422820; a=rsa-sha256; cv=none; b=GCsQWVxDZOppNxCs3zYonwzaYFzrWtqklxaLVuHb53tzWUO9cLfc2vuPqBkEGdJWiJ7DBG wetkxYBk4vFGhSn7LFfyAQdNRh4saXPJxWBg/lvK8ACfpDD5NIH2nSU7EKE/YgtqB7RxsF 5HFh4tTviyK3pTmZMT7zxw2XVeu72vNl9RhTXwUWD8EXUWzjKRptmWCK4RmUj1OMaaACTa MRP6QsJLdOm1MchkLdwMrhag34KXSloCR18tpeswWWBOuXdN0bqtiPyel8P8V4arve9hAa Hm1tYhaHirCnWXlEdAblc1Tk/2n5NqrgfKIeP5auhkO/wot9ci2F1RiXY0DOUA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1717422820; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=KGTZpjCXmkxTCQpkg5oCiVv7jNNub8qPnc0gmgff+/0=; b=hSf5mnHW1yuHjefS0Q4GyKSn8xQvOSviATURtiCSc/JCC+l0ET51VWGxBAiKxo+MN3+8Kc Q6xiA0RLsRBdG82CqfkHRf2GI4yqp+HC3QnRkVC0v4L7zx0Scm61qpED2m/RtdeSAzzhbH ptALyBMZtAjjhtGREL357utnbehII2/uGqnNOTw8kek9C+YPcodadjD2cNIymWmZHHl4wj 9B/O3HXwdOm57sniVgFRuwdRxfrxoIeeTRo+qbLWBl8THX7XE2KL7pILcWmwEx36iZk3bq K3nqYLtjvrP4RX47mH5bu6Hz6w2w2/JtDA9y2t/20OBYVIT2iXqKM4wsfr+qsQ== Received: from ampere1.nyi.freebsd.org (ampere1.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:23]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4VtFYw5q7fzdbN for ; Mon, 3 Jun 2024 13:53:40 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 449a by ampere1.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere1.nyi.freebsd.org); Mon, 03 Jun 2024 13:53:40 +0000 To: pkg-fallout@FreeBSD.org Subject: [package - 140releng-armv7-quarterly][science/gromacs] Failed for gromacs-2024.1 in configure Date: Mon, 03 Jun 2024 13:53:40 +0000 Message-Id: <665dcae4.449a.13cae427@ampere1.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere1/data/140releng-armv7-quarterly/f7e6fdeb7164/logs/gromacs-2024.1.log Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=140releng-armv7-quarterly&build=f7e6fdeb7164 Log: =>> Building science/gromacs build started at Mon Jun 3 13:53:12 UTC 2024 port directory: /usr/ports/science/gromacs package name: gromacs-2024.1 building for: FreeBSD 140releng-armv7-quarterly-job-13 14.0-RELEASE-p6 FreeBSD 14.0-RELEASE-p6 1400097 arm maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 4398 Apr 14 01:02 /usr/ports/science/gromacs/Makefile Ports top last git commit: f7e6fdeb7 Ports top unclean checkout: no Port dir last git commit: 1b931669d Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-30-g79e3edcd Host OSVERSION: 1500018 Jail OSVERSION: 1400097 Job Id: 13 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RELEASE-p6 1400097 UNAME_r=14.0-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-30-g79e3edcd MASTERMNT=/usr/local/poudriere/data/.m/140releng-armv7-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140releng-armv7-quarterly/13/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140releng-armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140releng-armv7-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-2024.1: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=off: Use single instead of double precision HWLOC=on: Build with HWLOC2, portable hardware locality package LEGACY=on: Install legacy API OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations ====> Multiprocessing: you have to select exactly one of them NOMP=off: No multiprocessing support MPICH=off: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS ====> Heterogeneous computing via OpenCL: you have to select exactly one of them OPENCL_NONE=on: No OpenCL OPENCL_ICD=off: OpenCL via Installable Client Driver OPENCL_SYCL=off: OpenCL via the OpenSYCL implementation of SYCL ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" BLA_VENDOR="Generic" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/gromacs/work/.cache HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/gromacs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/gromacs/work/.cache HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/gromacs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/gromacs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" SUFFIX_D="_d" HWLOC="" NO_HWLOC="@comment " LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL_ICD="@comment " NO_OPENCL_ICD="" OPENCL_NONE="" NO_OPENCL_NONE="@comment " OPENCL_SYCL="@comment " NO_OPENCL_SYCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " SUFFIX_MPI="" CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=l ib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" HWLOC="" NO_HWLOC="@comment " LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL_ICD="@comment " NO_OPENCL_ICD="" OPENCL_NONE="" NO_OPENCL_NONE="@comment " OPENCL_SYCL="@comment " NO_OPENCL_SYCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gromacs-2024.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [140releng-armv7-quarterly-job-13] Installing pkg-1.21.3... [140releng-armv7-quarterly-job-13] Extracting pkg-1.21.3: .......... done ===> gromacs-2024.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gromacs-2024.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2024.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2024.1 for building => SHA256 Checksum OK for gromacs-2024.1.tar.gz. => SHA256 Checksum OK for google-googletest-v1.13.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2024.1 for building ===> Extracting for gromacs-2024.1 => SHA256 Checksum OK for gromacs-2024.1.tar.gz. => SHA256 Checksum OK for google-googletest-v1.13.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for gromacs-2024.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gromacs-2024.1 depends on package: boost-libs>=1.44 - not found ===> Installing existing package /packages/All/boost-libs-1.84.0.pkg [140releng-armv7-quarterly-job-13] Installing boost-libs-1.84.0... [140releng-armv7-quarterly-job-13] `-- Installing icu-74.2_1,1... [140releng-armv7-quarterly-job-13] `-- Extracting icu-74.2_1,1: .......... done [140releng-armv7-quarterly-job-13] Extracting boost-libs-1.84.0: .......... done ===== Message from boost-libs-1.84.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> gromacs-2024.1 depends on package: boost-libs>=1.44 - found ===> Returning to build of gromacs-2024.1 ===> gromacs-2024.1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [140releng-armv7-quarterly-job-13] Installing cmake-core-3.28.3... [140releng-armv7-quarterly-job-13] `-- Installing expat-2.6.2... [140releng-armv7-quarterly-job-13] `-- Extracting expat-2.6.2: .......... done [140releng-armv7-quarterly-job-13] `-- Installing jsoncpp-1.9.5... [140releng-armv7-quarterly-job-13] `-- Extracting jsoncpp-1.9.5: .......... done [140releng-armv7-quarterly-job-13] `-- Installing libuv-1.48.0... [140releng-armv7-quarterly-job-13] `-- Extracting libuv-1.48.0: .......... done [140releng-armv7-quarterly-job-13] `-- Installing rhash-1.4.4_1... [140releng-armv7-quarterly-job-13] | `-- Installing gettext-runtime-0.22.5... [140releng-armv7-quarterly-job-13] | | `-- Installing indexinfo-0.3.1... [140releng-armv7-quarterly-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [140releng-armv7-quarterly-job-13] | `-- Extracting gettext-runtime-0.22.5: .......... done [140releng-armv7-quarterly-job-13] `-- Extracting rhash-1.4.4_1: .......... done [140releng-armv7-quarterly-job-13] Extracting cmake-core-3.28.3: .......... done ===> gromacs-2024.1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of gromacs-2024.1 ===> gromacs-2024.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [140releng-armv7-quarterly-job-13] Installing ninja-1.11.1,2... [140releng-armv7-quarterly-job-13] `-- Installing python39-3.9.18_2... [140releng-armv7-quarterly-job-13] | `-- Installing libffi-3.4.4_1... [140releng-armv7-quarterly-job-13] | `-- Extracting libffi-3.4.4_1: .......... done [140releng-armv7-quarterly-job-13] | `-- Installing mpdecimal-4.0.0... [140releng-armv7-quarterly-job-13] | `-- Extracting mpdecimal-4.0.0: .......... done [140releng-armv7-quarterly-job-13] | `-- Installing readline-8.2.10... [140releng-armv7-quarterly-job-13] | `-- Extracting readline-8.2.10: .......... done [140releng-armv7-quarterly-job-13] `-- Extracting python39-3.9.18_2: .......... done [140releng-armv7-quarterly-job-13] Extracting ninja-1.11.1,2: ........ done ===== Message from python39-3.9.18_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> gromacs-2024.1 depends on executable: ninja - found ===> Returning to build of gromacs-2024.1 ===> gromacs-2024.1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.2.0,1.pkg [140releng-armv7-quarterly-job-13] Installing pkgconf-2.2.0,1... [140releng-armv7-quarterly-job-13] Extracting pkgconf-2.2.0,1: .......... done ===> gromacs-2024.1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of gromacs-2024.1 ===> gromacs-2024.1 depends on file: /usr/local/bin/python3.9 - found ===> gromacs-2024.1 depends on package: perl5>=5.36<5.37 - not found ===> Installing existing package /packages/All/perl5-5.36.3_1.pkg [140releng-armv7-quarterly-job-13] Installing perl5-5.36.3_1... [140releng-armv7-quarterly-job-13] Extracting perl5-5.36.3_1: .......... done ===> gromacs-2024.1 depends on package: perl5>=5.36<5.37 - found ===> Returning to build of gromacs-2024.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gromacs-2024.1 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.10_5.pkg [140releng-armv7-quarterly-job-13] Installing fftw3-3.3.10_5... [140releng-armv7-quarterly-job-13] Extracting fftw3-3.3.10_5: .......... done ===> gromacs-2024.1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of gromacs-2024.1 ===> gromacs-2024.1 depends on shared library: libhwloc.so - not found ===> Installing existing package /packages/All/hwloc2-2.8.0_1.pkg [140releng-armv7-quarterly-job-13] Installing hwloc2-2.8.0_1... [140releng-armv7-quarterly-job-13] `-- Installing level-zero-1.16.11... [140releng-armv7-quarterly-job-13] | `-- Installing libfmt-10.2.1... [140releng-armv7-quarterly-job-13] | `-- Extracting libfmt-10.2.1: .......... done [140releng-armv7-quarterly-job-13] | `-- Installing spdlog-1.13.0... [140releng-armv7-quarterly-job-13] | `-- Extracting spdlog-1.13.0: .......... done [140releng-armv7-quarterly-job-13] `-- Extracting level-zero-1.16.11: .......... done [140releng-armv7-quarterly-job-13] `-- Installing libpciaccess-0.18... [140releng-armv7-quarterly-job-13] `-- Extracting libpciaccess-0.18: ........ done [140releng-armv7-quarterly-job-13] `-- Installing libxml2-2.11.7... [140releng-armv7-quarterly-job-13] `-- Extracting libxml2-2.11.7: .......... done [140releng-armv7-quarterly-job-13] Extracting hwloc2-2.8.0_1: .......... done ===> gromacs-2024.1 depends on shared library: libhwloc.so - found (/usr/local/lib/libhwloc.so) ===> Returning to build of gromacs-2024.1 ===> gromacs-2024.1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> gromacs-2024.1 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.12.0_1.pkg [140releng-armv7-quarterly-job-13] Installing blas-3.12.0_1... [140releng-armv7-quarterly-job-13] `-- Installing gcc13-13.2.0_4... [140releng-armv7-quarterly-job-13] | `-- Installing binutils-2.40_5,1... [140releng-armv7-quarterly-job-13] | | `-- Installing zstd-1.5.6... [140releng-armv7-quarterly-job-13] | | `-- Installing liblz4-1.9.4_1,1... [140releng-armv7-quarterly-job-13] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [140releng-armv7-quarterly-job-13] | | `-- Extracting zstd-1.5.6: .......... done [140releng-armv7-quarterly-job-13] | `-- Extracting binutils-2.40_5,1: .......... done [140releng-armv7-quarterly-job-13] | `-- Installing gmp-6.3.0... [140releng-armv7-quarterly-job-13] | `-- Extracting gmp-6.3.0: .......... done [140releng-armv7-quarterly-job-13] | `-- Installing mpc-1.3.1_1... [140releng-armv7-quarterly-job-13] | | `-- Installing mpfr-4.2.1,1... [140releng-armv7-quarterly-job-13] | | `-- Extracting mpfr-4.2.1,1: .......... done [140releng-armv7-quarterly-job-13] | `-- Extracting mpc-1.3.1_1: ......... done [140releng-armv7-quarterly-job-13] `-- Extracting gcc13-13.2.0_4: .......... done [140releng-armv7-quarterly-job-13] Extracting blas-3.12.0_1: ........ done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> gromacs-2024.1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of gromacs-2024.1 ===> gromacs-2024.1 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.12.0_2.pkg [140releng-armv7-quarterly-job-13] Installing lapack-3.12.0_2... [140releng-armv7-quarterly-job-13] Extracting lapack-3.12.0_2: .......... done ===> gromacs-2024.1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of gromacs-2024.1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for gromacs-2024.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/gromacs/work/.build -- The C compiler identification is Clang 16.0.6 -- The CXX compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CXX17_COMPILES_SIMPLY -- Performing Test CXX17_COMPILES_SIMPLY - Success -- Found Python3: /usr/local/bin/python3.9 (found suitable version "3.9.18", minimum required is "3.7") found components: Interpreter Development Development.Module Development.Embed -- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES) -- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) -- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND) CMake Error at cmake/gmxManageOpenMP.cmake:50 (message): The compiler you are using does not support OpenMP parallelism. This might hurt your performance a lot, in particular with GPUs. Try using a more recent version, or a different compiler. If you don't want to use OpenMP, disable it explicitly with -DGMX_OPENMP=OFF Call Stack (most recent call first): CMakeLists.txt:421 (include) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped in /usr/ports/science/gromacs