From nobody Sun Jun 02 04:58:38 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VsPl30j3rz5M2vv for ; Sun, 02 Jun 2024 04:58:39 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VsPl2459Xz4SN2 for ; Sun, 2 Jun 2024 04:58:38 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1717304318; a=rsa-sha256; cv=none; b=A4bKHdZ9joXWACXQQEa7kaE7HPvb0EquAEnmMk1OqqroQWv4QDAFRjsuQGrvrva9LuqXf0 BIDiHLctkT1WkgHhSrQy6TpJDorGk8DMgKyWxnJ4JzIf5cLW4FjmIdX+JNawm/TDAKdpu5 9KQdbMN3Xh05yYiuGfThT8WAJH9LOvzvHHoKYXxn5APC5vagYbEZDgQI5JMk1pvik/4bZv hqwrWLGa80cg3V04e2d2Mpr0fDvZdDpvxZVVdYjl5bJXjNGSWVXUxDzQDih77NDoIiwo43 yVU+ss2Iib8WB/4jMNAJmZigVO5gu2y/t3PDlf6QtY4uhqKNNAMDcw21WYCyTg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1717304318; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=ONyDjaFfn4kpwqmO3jQXsNwAL7RZ/zknaueTXlw8JSk=; b=Z2cvLoLhErgvdTr9uQ6AR8wbMWuTkJWNE285oLC9Wyr7htExM8AM7KM5DwCBqzcF/MCPjQ CYKHIYNt1KsMMFRh+JzeLU1t0OWy3sNkJNz7tzXsbOgJR65gQNCbTG7C4fkimDYI9faTgD ZS+wonoRzMZI9M8iod42QMGo/IyLHIzXXIQ6rklrFoY8IpUhNoK9bABFqyPuIpOh6c89yd NZux+ojPVVIGN/5A+AJqSR3Qk1GyThXhYNSXJ3ma0mW1oV/jlPdVoBd0CKGbwZACVD6vW6 MupjCBxTDbXLxTlg/Yrnv77N77SgbboYLhOX3qfOcqobRAQHQ3Z+j6ZDZqxXIg== Received: from beefy15.nyi.freebsd.org (beefy15.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:1e]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4VsPl23HGwzdHJ for ; Sun, 2 Jun 2024 04:58:38 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 32e5 by beefy15.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy15.nyi.freebsd.org); Sun, 02 Jun 2024 04:58:38 +0000 To: jwb@FreeBSD.org Subject: [package - 132i386-default][biology/py-pywgsim] Failed for py311-pywgsim-0.5.2 in build Cc: pkg-fallout@FreeBSD.org Date: Sun, 02 Jun 2024 04:58:38 +0000 Message-Id: <665bfbfe.32e5.745fd791@beefy15.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy15/data/132i386-default/2ce6ce9f7525/logs/py311-pywgsim-0.5.2.log Build URL: https://pkg-status.freebsd.org/beefy15/build.html?mastername=132i386-default&build=2ce6ce9f7525 Log: =>> Building biology/py-pywgsim build started at Sun Jun 2 04:58:23 UTC 2024 port directory: /usr/ports/biology/py-pywgsim package name: py311-pywgsim-0.5.2 building for: FreeBSD 132i386-default-job-13 13.2-RELEASE-p11 FreeBSD 13.2-RELEASE-p11 i386 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 398 Jan 14 2023 /usr/ports/biology/py-pywgsim/Makefile Ports top last git commit: 2ce6ce9f752 Ports top unclean checkout: no Port dir last git commit: 77d68471ade Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-30-g79e3edcd Host OSVERSION: 1500018 Jail OSVERSION: 1302001 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 OSVERSION=1302001 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 UNAME_m=i386 UNAME_p=i386 UNAME_r=13.2-RELEASE-p11 LOCALBASE=/usr/local UNAME_v=FreeBSD 13.2-RELEASE-p11 USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-30-g79e3edcd MASTERMNT=/usr/local/poudriere/data/.m/132i386-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/132i386-default/13/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=132i386-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/132i386-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-pywgsim/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555 " BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pywgsim" EXAMPLESDIR="share/examples/pywgsim" DATADIR="share/pywgsim" WWWDIR="www/pywgsim" ETCDIR="etc/pywgsim" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pywgsim DOCSDIR=/usr/local/share/doc/pywgsim EXAMPLESDIR=/usr/local/share/examples/pywgsim WWWDIR=/usr/local/www/pywgsim ETCDIR=/usr/local/etc/pywgsim --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pywgsim-0.5.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [132i386-default-job-13] Installing pkg-1.21.3... [132i386-default-job-13] Extracting pkg-1.21.3: .......... done ===> py311-pywgsim-0.5.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pywgsim-0.5.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py311-pywgsim-0.5.2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py311-pywgsim-0.5.2 for building => SHA256 Checksum OK for pywgsim-0.5.2.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py311-pywgsim-0.5.2 for building ===> Extracting for py311-pywgsim-0.5.2 => SHA256 Checksum OK for pywgsim-0.5.2.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-pywgsim-0.5.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pywgsim-0.5.2 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_1.pkg [132i386-default-job-13] Installing py311-setuptools-63.1.0_1... [132i386-default-job-13] `-- Installing python311-3.11.9... [132i386-default-job-13] | `-- Installing gettext-runtime-0.22.5... [132i386-default-job-13] | | `-- Installing indexinfo-0.3.1... [132i386-default-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [132i386-default-job-13] | `-- Extracting gettext-runtime-0.22.5: .......... done [132i386-default-job-13] | `-- Installing libffi-3.4.6... [132i386-default-job-13] | `-- Extracting libffi-3.4.6: .......... done [132i386-default-job-13] | `-- Installing mpdecimal-4.0.0... [132i386-default-job-13] | `-- Extracting mpdecimal-4.0.0: .......... done [132i386-default-job-13] | `-- Installing readline-8.2.10... [132i386-default-job-13] | `-- Extracting readline-8.2.10: .......... done [132i386-default-job-13] `-- Extracting python311-3.11.9: .......... done [132i386-default-job-13] Extracting py311-setuptools-63.1.0_1: .......... done ===== Message from python311-3.11.9: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===== Message from py311-setuptools-63.1.0_1: -- Only /usr/local/bin/easy_install-3.11 script has been installed since Python 3.11 is not the default Python version. ===> py311-pywgsim-0.5.2 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-pywgsim-0.5.2 ===> py311-pywgsim-0.5.2 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-pywgsim-0.5.2 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-pywgsim-0.5.2 running build running build_py creating build creating build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311 creating build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim copying pywgsim/main.py -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim copying pywgsim/__main__.py -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim copying pywgsim/__init__.py -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim running egg_info writing pywgsim.egg-info/PKG-INFO writing dependency_links to pywgsim.egg-info/dependency_links.txt writing entry points to pywgsim.egg-info/entry_points.txt writing requirements to pywgsim.egg-info/requires.txt writing top-level names to pywgsim.egg-info/top_level.txt reading manifest file 'pywgsim.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pywgsim.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pywgsim.src' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pywgsim.src' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pywgsim.src' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pywgsim.src' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying pywgsim/wgsim_lib.c -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim copying pywgsim/wgsim_lib.pyx -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim creating build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/src copying pywgsim/src/Makefile -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/src copying pywgsim/src/kseq.h -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/src copying pywgsim/src/wgsim_mod.c -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/src copying pywgsim/src/wgsim_mod.h -> build/lib.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/src running build_ext building 'pywgsim.wgsim' extension creating build/temp.freebsd-13.2-RELEASE-p11-i386-cpython-311 creating build/temp.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim creating build/temp.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/src cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Ipywgsim/src -I/usr/local/include/python3.11 -c pywgsim/src/wgsim_mod.c -o build/temp.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/src/wgsim_mod.o pywgsim/src/wgsim_mod.c:41:1: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] KSEQ_INIT(gzFile, gzread) ^~~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/kseq.h:220:2: note: expanded from macro 'KSEQ_INIT' KSTREAM_INIT(type_t, __read, 4096) \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/kseq.h:145:2: note: expanded from macro 'KSTREAM_INIT' __KS_GETUNTIL(__read, __bufsize) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/kseq.h:120:24: note: expanded from macro '__KS_GETUNTIL' if (str->m - str->l < i - ks->begin + 1) { \ ~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:114:16: warning: comparison of integers of different signs: 'int' and 'const size_t' (aka 'const unsigned int') [-Wsign-compare] for (i = 0; i != ks->seq.l; ++i) { ~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:170:16: warning: comparison of integers of different signs: 'int' and 'const size_t' (aka 'const unsigned int') [-Wsign-compare] for (i = 0; i != ks->seq.l; ++i) { ~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:192:21: warning: comparison of integers of different signs: 'int' and 'const size_t' (aka 'const unsigned int') [-Wsign-compare] for (j = i; j < ks->seq.l && hap1->s[j] == hap2->s[j] && (hap1->s[j]&mutmsk) == DELETE; ++j) ~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:221:21: warning: comparison of integers of different signs: 'int' and 'const size_t' (aka 'const unsigned int') [-Wsign-compare] for (j = i; j < ks->seq.l && hap1->s[j] != hap2->s[j] && (hap1->s[j]&mutmsk) == DELETE; ++j) ~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:231:21: warning: comparison of integers of different signs: 'int' and 'const size_t' (aka 'const unsigned int') [-Wsign-compare] for (j = i; j < ks->seq.l && hap1->s[j] != hap2->s[j] && (hap2->s[j]&mutmsk) == DELETE; ++j) ~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:341:56: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned int') [-Wsign-compare] } while (pos < 0 || pos >= ks->seq.l || pos + d - 1 >= ks->seq.l); ~~~~~~~~~~~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:341:28: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned int') [-Wsign-compare] } while (pos < 0 || pos >= ks->seq.l || pos + d - 1 >= ks->seq.l); ~~~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:379:4: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned int') [-Wsign-compare] __gen_read(0, pos, ++i); ^~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:358:61: note: expanded from macro '__gen_read' for (i = (start), k = 0, ext_coor[x] = -10; i >= 0 && i < ks->seq.l && k < s[x]; iter) { \ ~ ^ ~~~~~~~~~ pywgsim/src/wgsim_mod.c:380:4: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned int') [-Wsign-compare] __gen_read(1, pos + d - 1, --i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:358:61: note: expanded from macro '__gen_read' for (i = (start), k = 0, ext_coor[x] = -10; i >= 0 && i < ks->seq.l && k < s[x]; iter) { \ ~ ^ ~~~~~~~~~ 10 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Ipywgsim/src -I/usr/local/include/python3.11 -c pywgsim/wgsim_lib.c -o build/temp.freebsd-13.2-RELEASE-p11-i386-cpython-311/pywgsim/wgsim_lib.o pywgsim/wgsim_lib.c:220:12: fatal error: 'longintrepr.h' file not found #include "longintrepr.h" ^~~~~~~~~~~~~~~ 1 error generated. error: command '/usr/bin/cc' failed with exit code 1 *** Error code 1 Stop. make: stopped in /usr/ports/biology/py-pywgsim