[package - 133releng-armv7-default][science/cardioid] Failed for cardioid-g20211026_3 in configure
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Date: Fri, 19 Jul 2024 03:22:50 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/133releng-armv7-default/fccd9b82b9eb/logs/cardioid-g20211026_3.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=133releng-armv7-default&build=fccd9b82b9eb
Log:
=>> Building science/cardioid
build started at Fri Jul 19 03:22:16 UTC 2024
port directory: /usr/ports/science/cardioid
package name: cardioid-g20211026_3
building for: FreeBSD 133releng-armv7-default-job-02 13.3-RELEASE-p4 FreeBSD 13.3-RELEASE-p4 1303001 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1247 Jan 14 2024 /usr/ports/science/cardioid/Makefile
Ports top last git commit: fccd9b82b9e
Ports top unclean checkout: no
Port dir last git commit: f2489ab0c72
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500019
Jail OSVERSION: 1303001
Job Id: 02
---Begin Environment---
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PORT_FLAGS=
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---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for cardioid-g20211026_3:
MFEM=off: Build with MFEM mesh library
OPENMP=on: Parallel processing support via OpenMP
====> MPI (Message Passing Interface) support: you have to select exactly one of them
NOMPI=off: Build without parallel processing support
MPICH=on: Parallel processing support via MPICH 3
OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cardioid/work/.cache HOME=/wrkdirs/usr/ports/science/cardioid/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cardioid/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cardioid/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cardioid/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/cardioid/work/.cache HOME=/wrkdirs/usr/ports/science/cardioid/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cardioid/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/cardioid/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/cardioid/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install
-s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
MFEM="@comment " NO_MFEM="" MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" CMAKE_BUILD_TYPE="release" OSREL=13.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cardioid" EXAMPLESDIR="share/examples/cardioid" DATADIR="share/cardioid" WWWDIR="www/cardioid" ETCDIR="etc/cardioid"
--End PLIST_SUB--
--SUB_LIST--
MFEM="@comment " NO_MFEM="" MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cardioid DOCSDIR=/usr/local/share/doc/cardioid EXAMPLESDIR=/usr/local/share/examples/cardioid WWWDIR=/usr/local/www/cardioid ETCDIR=/usr/local/etc/cardioid
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cardioid-g20211026_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[133releng-armv7-default-job-02] Installing pkg-1.21.3...
[133releng-armv7-default-job-02] Extracting pkg-1.21.3: .......... done
===> cardioid-g20211026_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cardioid-g20211026_3
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by cardioid-g20211026_3 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by cardioid-g20211026_3 for building
=> SHA256 Checksum OK for LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz.
=> SHA256 Checksum OK for mfem-mfem-v4.4_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by cardioid-g20211026_3 for building
===> Extracting for cardioid-g20211026_3
=> SHA256 Checksum OK for LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz.
=> SHA256 Checksum OK for mfem-mfem-v4.4_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for cardioid-g20211026_3
===> Applying FreeBSD patches for cardioid-g20211026_3 from /usr/ports/science/cardioid/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cardioid-g20211026_3 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.29.6.pkg
[133releng-armv7-default-job-02] Installing cmake-core-3.29.6...
[133releng-armv7-default-job-02] `-- Installing expat-2.6.2...
[133releng-armv7-default-job-02] `-- Extracting expat-2.6.2: .......... done
[133releng-armv7-default-job-02] `-- Installing jsoncpp-1.9.5...
[133releng-armv7-default-job-02] `-- Extracting jsoncpp-1.9.5: .......... done
[133releng-armv7-default-job-02] `-- Installing libuv-1.48.0...
[133releng-armv7-default-job-02] `-- Extracting libuv-1.48.0: .......... done
<snip>
[133releng-armv7-default-job-02] `-- Extracting rhash-1.4.4_1: .......... done
[133releng-armv7-default-job-02] Extracting cmake-core-3.29.6: .......... done
===> cardioid-g20211026_3 depends on file: /usr/local/bin/cmake - found
===> Returning to build of cardioid-g20211026_3
===> cardioid-g20211026_3 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,4.pkg
[133releng-armv7-default-job-02] Installing ninja-1.11.1,4...
[133releng-armv7-default-job-02] `-- Installing python311-3.11.9_1...
[133releng-armv7-default-job-02] | `-- Installing libffi-3.4.6...
[133releng-armv7-default-job-02] | `-- Extracting libffi-3.4.6: .......... done
[133releng-armv7-default-job-02] | `-- Installing mpdecimal-4.0.0...
[133releng-armv7-default-job-02] | `-- Extracting mpdecimal-4.0.0: .......... done
[133releng-armv7-default-job-02] | `-- Installing readline-8.2.10...
[133releng-armv7-default-job-02] | `-- Extracting readline-8.2.10: .......... done
[133releng-armv7-default-job-02] `-- Extracting python311-3.11.9_1: .......... done
[133releng-armv7-default-job-02] Extracting ninja-1.11.1,4: ........ done
=====
Message from python311-3.11.9_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> cardioid-g20211026_3 depends on executable: ninja - found
===> Returning to build of cardioid-g20211026_3
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> cardioid-g20211026_3 depends on shared library: libblas.so - not found
===> Installing existing package /packages/All/blas-3.12.0_1.pkg
[133releng-armv7-default-job-02] Installing blas-3.12.0_1...
[133releng-armv7-default-job-02] `-- Installing gcc13-13.2.0_4...
[133releng-armv7-default-job-02] | `-- Installing binutils-2.40_5,1...
[133releng-armv7-default-job-02] | | `-- Installing zstd-1.5.6...
[133releng-armv7-default-job-02] | | `-- Installing liblz4-1.9.4_1,1...
[133releng-armv7-default-job-02] | | `-- Extracting liblz4-1.9.4_1,1: .......... done
[133releng-armv7-default-job-02] | | `-- Extracting zstd-1.5.6: .......... done
[133releng-armv7-default-job-02] | `-- Extracting binutils-2.40_5,1: .......... done
[133releng-armv7-default-job-02] | `-- Installing gmp-6.3.0...
[133releng-armv7-default-job-02] | `-- Extracting gmp-6.3.0: .......... done
[133releng-armv7-default-job-02] | `-- Installing mpc-1.3.1_1...
[133releng-armv7-default-job-02] | | `-- Installing mpfr-4.2.1,1...
[133releng-armv7-default-job-02] | | `-- Extracting mpfr-4.2.1,1: .......... done
[133releng-armv7-default-job-02] | `-- Extracting mpc-1.3.1_1: ......... done
[133releng-armv7-default-job-02] `-- Extracting gcc13-13.2.0_4: .......... done
[133releng-armv7-default-job-02] Extracting blas-3.12.0_1: ........ done
=====
Message from gcc13-13.2.0_4:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> cardioid-g20211026_3 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===> Returning to build of cardioid-g20211026_3
===> cardioid-g20211026_3 depends on shared library: liblapack.so - not found
===> Installing existing package /packages/All/lapack-3.12.0_2.pkg
[133releng-armv7-default-job-02] Installing lapack-3.12.0_2...
[133releng-armv7-default-job-02] Extracting lapack-3.12.0_2: .......... done
===> cardioid-g20211026_3 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===> Returning to build of cardioid-g20211026_3
===> cardioid-g20211026_3 depends on shared library: libmpich.so - not found
===> Installing existing package /packages/All/mpich-4.2.2.pkg
[133releng-armv7-default-job-02] Installing mpich-4.2.2...
[133releng-armv7-default-job-02] `-- Installing hwloc2-2.8.0_1...
[133releng-armv7-default-job-02] | `-- Installing level-zero-1.17.17...
[133releng-armv7-default-job-02] | | `-- Installing libfmt-10.2.1...
[133releng-armv7-default-job-02] | | `-- Extracting libfmt-10.2.1: .......... done
[133releng-armv7-default-job-02] | | `-- Installing spdlog-1.14.1...
[133releng-armv7-default-job-02] | | `-- Extracting spdlog-1.14.1: .......... done
[133releng-armv7-default-job-02] | `-- Extracting level-zero-1.17.17: .......... done
[133releng-armv7-default-job-02] | `-- Installing libpciaccess-0.18...
[133releng-armv7-default-job-02] | `-- Extracting libpciaccess-0.18: ........ done
[133releng-armv7-default-job-02] | `-- Installing libxml2-2.11.8...
[133releng-armv7-default-job-02] | `-- Extracting libxml2-2.11.8: .......... done
[133releng-armv7-default-job-02] `-- Extracting hwloc2-2.8.0_1: .......... done
[133releng-armv7-default-job-02] `-- Installing json-c-0.17...
[133releng-armv7-default-job-02] `-- Extracting json-c-0.17: .......... done
[133releng-armv7-default-job-02] `-- Installing libepoll-shim-0.0.20240608...
[133releng-armv7-default-job-02] `-- Extracting libepoll-shim-0.0.20240608: .......... done
[133releng-armv7-default-job-02] `-- Installing libfabric-1.15.1_2...
[133releng-armv7-default-job-02] `-- Extracting libfabric-1.15.1_2: .......... done
[133releng-armv7-default-job-02] `-- Installing perl5-5.36.3_1...
[133releng-armv7-default-job-02] `-- Extracting perl5-5.36.3_1: .......... done
[133releng-armv7-default-job-02] Extracting mpich-4.2.2: .......... done
===> cardioid-g20211026_3 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===> Returning to build of cardioid-g20211026_3
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for cardioid-g20211026_3
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/cardioid/work/.build
CMake Warning (dev) at CMakeLists.txt:32 (project):
cmake_minimum_required() should be called prior to this top-level project()
call. Please see the cmake-commands(7) manual for usage documentation of
both commands.
This warning is for project developers. Use -Wno-dev to suppress it.
-- The C compiler identification is Clang 17.0.6
-- The CXX compiler identification is Clang 17.0.6
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:33 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Git Support is OFF
-- MPI Support is ON
-- Found MPI_C: /usr/local/lib/libmpi.so (found version "4.1")
-- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "4.1")
-- Found MPI: TRUE (found version "4.1")
-- MPI C Compile Flags:
-- MPI C Include Path: /usr/local/include/json-c;/usr/local/include/gcc13;/usr/local/include
-- MPI C Link Flags: -Wl,-rpath=/usr/local/lib/gcc13 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc13
-- MPI C Libraries: /usr/local/lib/libmpi.so
-- MPI CXX Compile Flags:
-- MPI CXX Include Path: /usr/local/include
-- MPI CXX Link Flags: -Wl,-rpath=/usr/local/lib/gcc13 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc13
-- MPI CXX Libraries: /usr/local/lib/libmpicxx.so;/usr/local/lib/libmpi.so
-- MPI Executable: /usr/local/bin/mpiexec
-- MPI Num Proc Flag: -n
-- MPI Command Append:
CMake Warning (dev) at blt/cmake/BLTMacros.cmake:314 (set):
implicitly converting 'LIST' to 'STRING' type.
Call Stack (most recent call first):
blt/cmake/thirdparty/SetupMPI.cmake:93 (blt_register_library)
blt/cmake/thirdparty/SetupThirdParty.cmake:69 (include)
blt/SetupBLT.cmake:107 (include)
CMakeLists.txt:48 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at blt/cmake/BLTMacros.cmake:331 (set):
implicitly converting 'LIST' to 'STRING' type.
Call Stack (most recent call first):
blt/cmake/thirdparty/SetupMPI.cmake:93 (blt_register_library)
blt/cmake/thirdparty/SetupThirdParty.cmake:69 (include)
blt/SetupBLT.cmake:107 (include)
CMakeLists.txt:48 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- CUDA Support is OFF
-- ROCM Support is OFF
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Sphinx support is ON
-- Failed to locate Sphinx executable (missing: SPHINX_EXECUTABLE)
-- Valgrind support is ON
-- Failed to locate Valgrind executable (missing: VALGRIND_EXECUTABLE)
-- Uncrustify support is ON
-- Failed to locate Uncrustify executable (missing: UNCRUSTIFY_EXECUTABLE)
-- Cppcheck support is ON
-- Failed to locate Cppcheck executable (missing: CPPCHECK_EXECUTABLE)
CMake Warning (dev) at blt/SetupBLT.cmake:170 (set):
implicitly converting 'LIST' to 'STRING' type.
Call Stack (most recent call first):
CMakeLists.txt:48 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at blt/SetupBLT.cmake:172 (set):
implicitly converting 'LIST' to 'STRING' type.
Call Stack (most recent call first):
CMakeLists.txt:48 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- OpenMP Support is true
CMake Error at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES)
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:600 (_FPHSA_FAILURE_MESSAGE)
/usr/local/share/cmake/Modules/FindOpenMP.cmake:581 (find_package_handle_standard_args)
blt/cmake/SetupCompilerOptions.cmake:53 (find_package)
blt/SetupBLT.cmake:180 (include)
CMakeLists.txt:48 (include)
-- Configuring incomplete, errors occurred!
*** Error code 1
Stop.
make: stopped in /usr/ports/science/cardioid