From nobody Wed Jul 17 09:54:54 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4WPBB70KGqz5R0QJ for ; Wed, 17 Jul 2024 09:54:55 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4WPBB65hZvz4WkZ for ; Wed, 17 Jul 2024 09:54:54 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1721210094; a=rsa-sha256; cv=none; b=PM6u0Fq5qcCMt6rmGfbOWzh68FcJ2OKFaGCV8EasfX8DqBItucqpeIh81/GlacZDU+eqWN Trn3YDF/Iae2uZ+1qimRF7hu1V9Tilq+R7oW36URoT7Yc4uU3SJaaNw8C2b8adeD/b3opE ChuVzXFrx0jN5gWSch+25J0OgA1Ru0m1xgA70UavpXBGglEW9cPII/nj05+e4KioKLqbWe O5iiYwC2GHAzPU/dPcwu+acko9f3Fao2UjBw3+QsrF3kTtiNdUj9cg3uhkKHhJnL6gDZXD vBihM/DwEtsDyrDt+iY197y3GBxnx17l1/KyK3sFTzlsqAhH9U73MjpGnMn/IA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1721210094; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=G9pj8DnJ0Yiz3TFH9r4n5XTnwE1IZ0lojyY8rb9djKY=; b=qnQbLUXhp7QSqXCW4iVHlvlzWXT9hSeXsS/wgFuB/4jvPi1OpwW5/KlDWWeVE/WIFhZCr5 AEVW7f++H9n1UIhm38XqDWQ1btyX/X/p5HRJgWd+lmgfyJLybhr9w7+evcFD0pn9mCXrUe H9iF599v60ZXvYoNOODDOOtuMjP/ZV16knRM4TxnmGzo29VzuXhjkhFCRxxTqodS0lj/Mo kO1pUgTBr0Z4RWOmAAzuCktC2rreY/2V0K+b15XnxvMZvicESDfjgzXxJpHXA3UAA2FdsI +ohkd5zF2SSNL+bVfmWQY+0bAlrqShG8Iiivv4UzB5iUFxyA5GVE5TAGwirzSw== Received: from ampere2.nyi.freebsd.org (ampere2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:24]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4WPBB659G2z1F0M for ; Wed, 17 Jul 2024 09:54:54 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 1728 by ampere2.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on ampere2.nyi.freebsd.org); Wed, 17 Jul 2024 09:54:54 +0000 To: yuri@FreeBSD.org Subject: [package - main-arm64-default][biology/gatk] Failed for gatk-4.6.0.0 in checksum Cc: pkg-fallout@FreeBSD.org Date: Wed, 17 Jul 2024 09:54:54 +0000 Message-Id: <669794ee.1728.6b81db3f@ampere2.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-arm64-default/p91686e4da49f_s772ae9eddf8/logs/gatk-4.6.0.0.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-arm64-default&build=p91686e4da49f_s772ae9eddf8 Log: =>> Building biology/gatk build started at Wed Jul 17 09:26:35 UTC 2024 port directory: /usr/ports/biology/gatk package name: gatk-4.6.0.0 building for: FreeBSD main-arm64-default-job-11 15.0-CURRENT FreeBSD 15.0-CURRENT 1500020 arm64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 3944 Jul 14 01:02 /usr/ports/biology/gatk/Makefile Ports top last git commit: 91686e4da49 Ports top unclean checkout: no Port dir last git commit: c4faabf62b3 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-30-g79e3edcd Host OSVERSION: 1500019 Jail OSVERSION: 1500020 Job Id: 11 !!! Jail is newer than host. (Jail: 1500020, Host: 1500019) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500020 UNAME_v=FreeBSD 15.0-CURRENT 1500020 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-30-g79e3edcd MASTERMNT=/usr/local/poudriere/data/.m/main-arm64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-arm64-default/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-arm64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gatk-4.6.0.0: WITH_LARGE_FILES=on: Download large LFS files needed for build and tests ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gatk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gatk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gatk/work/.cache HOME=/wrkdirs/usr/ports/biology/gatk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gatk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gatk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gatk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gatk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gatk/work/.cache HOME=/wrkdirs/usr/ports/biology/gatk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gatk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gatk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="i nstall -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gatk" EXAMPLESDIR="share/examples/gatk" DATADIR="share/gatk" WWWDIR="www/gatk" ETCDIR="etc/gatk" --End PLIST_SUB-- --SUB_LIST-- PORTVERSION=4.6.0.0 JAVA=/usr/local/openjdk17/bin/java JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="17" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gatk DOCSDIR=/usr/local/share/doc/gatk EXAMPLESDIR=/usr/local/share/examples/gatk WWWDIR=/usr/local/www/gatk ETCDIR=/usr/local/etc/gatk --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 2048 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gatk-4.6.0.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [main-arm64-default-job-11] Installing pkg-1.21.3... [main-arm64-default-job-11] Extracting pkg-1.21.3: .......... done ===> gatk-4.6.0.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gatk-4.6.0.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gatk-4.6.0.0 depends on executable: git - not found ===> Installing existing package /packages/All/git-2.45.2_1.pkg [main-arm64-default-job-11] Installing git-2.45.2_1... [main-arm64-default-job-11] `-- Installing curl-8.8.0... [main-arm64-default-job-11] | `-- Installing libnghttp2-1.62.1... [main-arm64-default-job-11] | `-- Extracting libnghttp2-1.62.1: .......... done [main-arm64-default-job-11] | `-- Installing libpsl-0.21.5_1... [main-arm64-default-job-11] | | `-- Installing libidn2-2.3.7... [main-arm64-default-job-11] | | `-- Installing indexinfo-0.3.1... [main-arm64-default-job-11] | | `-- Extracting indexinfo-0.3.1: .... done [main-arm64-default-job-11] | | `-- Installing libunistring-1.2... [main-arm64-default-job-11] | | `-- Extracting libunistring-1.2: .......... done [main-arm64-default-job-11] | | `-- Extracting libidn2-2.3.7: .......... done [main-arm64-default-job-11] | `-- Extracting libpsl-0.21.5_1: .......... done [main-arm64-default-job-11] | `-- Installing libssh2-1.11.0_1,3... [main-arm64-default-job-11] | `-- Extracting libssh2-1.11.0_1,3: .......... done [main-arm64-default-job-11] `-- Extracting curl-8.8.0: .......... done [main-arm64-default-job-11] `-- Installing expat-2.6.2... [main-arm64-default-job-11] `-- Extracting expat-2.6.2: .......... done [main-arm64-default-job-11] `-- Installing gettext-runtime-0.22.5... [main-arm64-default-job-11] `-- Extracting gettext-runtime-0.22.5: .......... done [main-arm64-default-job-11] `-- Installing p5-Authen-SASL-2.17... [main-arm64-default-job-11] | `-- Installing p5-Digest-HMAC-1.04... [main-arm64-default-job-11] | | `-- Installing perl5-5.36.3_1... [main-arm64-default-job-11] | | `-- Extracting perl5-5.36.3_1: .......... done [main-arm64-default-job-11] | `-- Extracting p5-Digest-HMAC-1.04: .......... done [main-arm64-default-job-11] | `-- Installing p5-GSSAPI-0.28_2... [main-arm64-default-job-11] | `-- Extracting p5-GSSAPI-0.28_2: .......... done [main-arm64-default-job-11] `-- Extracting p5-Authen-SASL-2.17: .......... done [main-arm64-default-job-11] `-- Installing p5-CGI-4.66... [main-arm64-default-job-11] | `-- Installing p5-HTML-Parser-3.82... [main-arm64-default-job-11] | | `-- Installing p5-HTML-Tagset-3.24... [main-arm64-default-job-11] | | `-- Extracting p5-HTML-Tagset-3.24: ....... done [main-arm64-default-job-11] | | `-- Installing p5-HTTP-Message-6.46... [main-arm64-default-job-11] | | `-- Installing p5-Clone-0.46... [main-arm64-default-job-11] | | `-- Extracting p5-Clone-0.46: ......... done [main-arm64-default-job-11] | | `-- Installing p5-Encode-Locale-1.05... [main-arm64-default-job-11] | | `-- Extracting p5-Encode-Locale-1.05: ....... done Downloading src/test/resources/large/mitochondria_references/Homo_sapiens_assembly38.chrM.shifted_by_8000_bases.fasta.pac (4.1 KB) Downloading src/test/resources/large/mitochondria_references/Homo_sapiens_assembly38.chrM.shifted_by_8000_bases.fasta.sa (8.3 KB) Downloading src/test/resources/large/mitochondria_references/ShiftBack.chain (125 B) Downloading src/test/resources/large/mitochondria_references/blacklist_sites.hg38.chrM.bed (132 B) Downloading src/test/resources/large/mitochondria_references/blacklist_sites.hg38.chrM.bed.idx (283 B) Downloading src/test/resources/large/mitochondria_references/blacklist_sites.hg38.chrM.shifted_by_8000_bases.bed (138 B) Downloading src/test/resources/large/mitochondria_references/blacklist_sites.hg38.chrM.shifted_by_8000_bases.bed.idx (305 B) Downloading src/test/resources/large/mitochondria_references/control_region_shifted.chrM.interval_list (233 B) Downloading 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src/test/resources/large/mutect/dream_synthetic_bams/normal_4.bam (29 MB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/normal_4.bam.bai (47 KB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor.bam (4.8 MB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor.bam.bai (5.3 KB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_1.bam (3.9 MB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_1.bam.bai (32 KB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_2.bam (5.5 MB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_2.bam.bai (33 KB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_3.bam (21 MB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_3.bam.bai (40 KB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_4.bam (29 MB) Downloading src/test/resources/large/mutect/dream_synthetic_bams/tumor_4.bam.bai (46 KB) Downloading src/test/resources/large/mutect/highDPMTsnippet.bai (96 B) Downloading src/test/resources/large/mutect/highDPMTsnippet.bam (1.5 MB) Downloading src/test/resources/large/mutect/mito/alleles.vcf (924 B) Downloading src/test/resources/large/mutect/mito/alleles.vcf.idx (297 B) Downloading src/test/resources/large/mutect/mito/mito.bam (1.1 MB) Downloading src/test/resources/large/mutect/mito/mito.bam.bai (96 B) Downloading src/test/resources/large/mutect/mito/mito_shifted_8000.dict (135 B) Downloading src/test/resources/large/mutect/mito/mito_shifted_8000.fasta (17 KB) Downloading src/test/resources/large/mutect/mito/mito_shifted_8000.fasta.fai (21 B) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv (2.2 MB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv (2.2 MB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv (2.2 MB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv (2.2 MB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv (191 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv (190 KB) Downloading 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src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.1-5M.vcf.gz.tbi (2.0 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz (50 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/resources/Mills_and_1000G_gold_standard.indels.hg38.chr1.5M-10M.vcf.gz.tbi (2.5 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/score/expected/extract.AS.snpIndel.posUn.train.snpIndel.posOnly.IF.score.snp.annot.hdf5 (737 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/score/expected/extract.AS.snpIndel.posUn.train.snpIndel.posOnly.IF.score.snp.scores.hdf5 (35 KB) Downloading 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src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/train/expected/extract.AS.snpIndel.posUn.train.snpIndel.posOnly.IF.indel.calibrationScores.hdf5 (2.7 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/train/expected/extract.AS.snpIndel.posUn.train.snpIndel.posOnly.IF.indel.scorer.pkl (236 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/train/expected/extract.AS.snpIndel.posUn.train.snpIndel.posOnly.IF.indel.trainingScores.hdf5 (2.9 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/train/expected/extract.AS.snpIndel.posUn.train.snpIndel.posOnly.IF.snp.calibrationScores.hdf5 (5.0 KB) Downloading src/test/resources/large/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/train/expected/extract.AS.snpIndel.posUn.train.snpIndel.posOnly.IF.snp.scorer.pkl (506 KB) Downloading 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src/test/resources/large/whole_exome_illumina_coding_v1.Homo_sapiens_assembly19.targets.interval_list (11 MB) ===> Fetching all distfiles required by gatk-4.6.0.0 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by gatk-4.6.0.0 for building /usr/ports/Mk/Scripts/checksum.sh: cannot open gatk-4.6.0.0-deps.tar.gz: No such file or directory *** Error code 2 Stop. make: stopped in /usr/ports/biology/gatk