[package - 132amd64-quarterly][science/py-qcengine] Failed for py39-qcengine-0.29.0 in run-depends
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Date: Thu, 11 Jan 2024 01:18:19 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy14/data/132amd64-quarterly/d9d4201a6cd7/logs/py39-qcengine-0.29.0.log Build URL: https://pkg-status.freebsd.org/beefy14/build.html?mastername=132amd64-quarterly&build=d9d4201a6cd7 Log: =>> Building science/py-qcengine build started at Thu Jan 11 01:17:34 UTC 2024 port directory: /usr/ports/science/py-qcengine package name: py39-qcengine-0.29.0 building for: FreeBSD 132amd64-quarterly-job-13 13.2-RELEASE-p9 FreeBSD 13.2-RELEASE-p9 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1636 Jan 6 01:02 /usr/ports/science/py-qcengine/Makefile Ports top last git commit: d9d4201a6 Ports top unclean checkout: no Port dir last git commit: 756e18783 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500006 Jail OSVERSION: 1302001 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p9 UNAME_r=13.2-RELEASE-p9 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/132amd64-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/132amd64-quarterly/13/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=132amd64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/132amd64-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-qcengine/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-qcengine/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PRO GRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-qcengine" EXAMPLESDIR="share/examples/py39-qcengine" DATADIR="share/py39-qcengine" WWWDIR="www/py39-qcengine" ETCDIR="etc/py39-qcengine" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-qcengine DOCSDIR=/usr/local/share/doc/py39-qcengine EXAMPLESDIR=/usr/local/share/examples/py39-qcengine WWWDIR=/usr/local/www/py39-qcengine ETCDIR=/usr/local/etc/py39-qcengine --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-qcengine-0.29.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [132amd64-quarterly-job-13] Installing pkg-1.20.9... [132amd64-quarterly-job-13] Extracting pkg-1.20.9: .......... done ===> py39-qcengine-0.29.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-qcengine-0.29.0 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-qcengine-0.29.0 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-qcengine-0.29.0 for building => SHA256 Checksum OK for qcengine-0.29.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-qcengine-0.29.0 for building ===> Extracting for py39-qcengine-0.29.0 => SHA256 Checksum OK for qcengine-0.29.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-qcengine-0.29.0 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-qcengine-0.29.0 depends on package: py39-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg [132amd64-quarterly-job-13] Installing py39-setuptools-63.1.0_1... [132amd64-quarterly-job-13] `-- Installing python39-3.9.18... [132amd64-quarterly-job-13] | `-- Installing gettext-runtime-0.22.3... [132amd64-quarterly-job-13] | | `-- Installing indexinfo-0.3.1... [132amd64-quarterly-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [132amd64-quarterly-job-13] | `-- Extracting gettext-runtime-0.22.3: .......... done [132amd64-quarterly-job-13] | `-- Installing libffi-3.4.4... [132amd64-quarterly-job-13] | `-- Extracting libffi-3.4.4: .......... done [132amd64-quarterly-job-13] | `-- Installing mpdecimal-2.5.1... [132amd64-quarterly-job-13] | `-- Extracting mpdecimal-2.5.1: .......... done [132amd64-quarterly-job-13] | `-- Installing readline-8.2.7... [132amd64-quarterly-job-13] | `-- Extracting readline-8.2.7: .......... done [132amd64-quarterly-job-13] `-- Extracting python39-3.9.18: .......... done [132amd64-quarterly-job-13] Extracting py39-setuptools-63.1.0_1: .......... done ===== Message from python39-3.9.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-qcengine-0.29.0 depends on package: py39-setuptools>=63.1.0 - found <snip> [132amd64-quarterly-job-13] | | `-- Installing pango-1.50.14... [132amd64-quarterly-job-13] | | | `-- Installing encodings-1.0.5,1... [132amd64-quarterly-job-13] | | | `-- Extracting encodings-1.0.5,1: .......... done [132amd64-quarterly-job-13] | | | `-- Installing libthai-0.1.29... [132amd64-quarterly-job-13] | | | `-- Installing libdatrie-0.2.13_1... [132amd64-quarterly-job-13] | | | `-- Extracting libdatrie-0.2.13_1: .......... done [132amd64-quarterly-job-13] | | | `-- Extracting libthai-0.1.29: .......... done [132amd64-quarterly-job-13] | | | `-- Installing xorg-fonts-truetype-7.7_1... [132amd64-quarterly-job-13] | | | `-- Installing dejavu-2.37_3... [132amd64-quarterly-job-13] | | | | `-- Installing mkfontscale-1.2.1... [132amd64-quarterly-job-13] | | | | `-- Installing libfontenc-1.1.7... [132amd64-quarterly-job-13] | | | | `-- Extracting libfontenc-1.1.7: ......... done [132amd64-quarterly-job-13] | | | | `-- Extracting mkfontscale-1.2.1: ....... done [132amd64-quarterly-job-13] | | | `-- Extracting dejavu-2.37_3: .......... done [132amd64-quarterly-job-13] | | | `-- Installing font-bh-ttf-1.0.3_5... [132amd64-quarterly-job-13] | | | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [132amd64-quarterly-job-13] | | | `-- Installing font-misc-ethiopic-1.0.4... [132amd64-quarterly-job-13] | | | `-- Extracting font-misc-ethiopic-1.0.4: ...... done [132amd64-quarterly-job-13] | | | `-- Installing font-misc-meltho-1.0.3_5... [132amd64-quarterly-job-13] | | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [132amd64-quarterly-job-13] | | | `-- Extracting xorg-fonts-truetype-7.7_1: ... done [132amd64-quarterly-job-13] | | `-- Extracting pango-1.50.14: .......... done [132amd64-quarterly-job-13] | | `-- Extracting graphviz-9.0.0_1: .......... done [132amd64-quarterly-job-13] | `-- Extracting py39-pydot-1.4.2: .......... done [132amd64-quarterly-job-13] | `-- Installing py39-pygraphviz-1.6... [132amd64-quarterly-job-13] | `-- Extracting py39-pygraphviz-1.6: .......... done [132amd64-quarterly-job-13] | `-- Installing py39-scikit-sparse-0.4.8_6... [132amd64-quarterly-job-13] | | `-- Installing py39-scipy-1.11.1_2... [132amd64-quarterly-job-13] | | `-- Installing blas-3.12.0... [132amd64-quarterly-job-13] | | `-- Extracting blas-3.12.0: ........ done [132amd64-quarterly-job-13] | | `-- Extracting py39-scipy-1.11.1_2: .......... done [132amd64-quarterly-job-13] | `-- Extracting py39-scikit-sparse-0.4.8_6: .......... done [132amd64-quarterly-job-13] | `-- Installing py39-yaml-6.0.1... [132amd64-quarterly-job-13] | | `-- Installing libyaml-0.2.5... [132amd64-quarterly-job-13] | | `-- Extracting libyaml-0.2.5: ......... done [132amd64-quarterly-job-13] | `-- Extracting py39-yaml-6.0.1: .......... done [132amd64-quarterly-job-13] `-- Extracting py39-networkx-3.2,1: .......... done [132amd64-quarterly-job-13] `-- Installing py39-nglview-3.0.7... [132amd64-quarterly-job-13] `-- Extracting py39-nglview-3.0.7: .......... done [132amd64-quarterly-job-13] `-- Installing py39-pint-0.23... [132amd64-quarterly-job-13] `-- Extracting py39-pint-0.23: .......... done [132amd64-quarterly-job-13] `-- Installing py39-pydantic2-2.5.3... [132amd64-quarterly-job-13] | `-- Installing py39-annotated-types-0.6.0... [132amd64-quarterly-job-13] | `-- Extracting py39-annotated-types-0.6.0: .......... done [132amd64-quarterly-job-13] | `-- Installing py39-pydantic-core-2.14.6... [132amd64-quarterly-job-13] | `-- Extracting py39-pydantic-core-2.14.6: .......... done pkg-static: py39-pydantic2-2.5.3 conflicts with py39-pydantic-1.10.13,1 (installs files into the same place). Problematic file: /usr/local/lib/python3.9/site-packages/pydantic/__init__.py Failed to install the following 1 package(s): /packages/All/py39-qcelemental-0.27.1.pkg ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from openpgm-5.2.122_6: -- ===> NOTICE: The openpgm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from gcc12-12.2.0_7: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from boost-libs-1.83.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from freetype2-2.13.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from postgresql15-client-15.5: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===== Message from py39-pandas-2.0.3,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. *** Error code 1 Stop. make: stopped in /usr/ports/science/py-qcengine