[package - main-armv7-default][science/py-gsd] Failed for py39-gsd-3.1.1 in configure/runaway

From: <pkg-fallout_at_FreeBSD.org>
Date: Thu, 29 Feb 2024 08:47:33 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p43e3af5f5763_sf5f08e41aa/logs/py39-gsd-3.1.1.log
Build URL:      https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p43e3af5f5763_sf5f08e41aa
Log:

=>> Building science/py-gsd
build started at Thu Feb 29 06:47:22 UTC 2024
port directory: /usr/ports/science/py-gsd
package name: py39-gsd-3.1.1
building for: FreeBSD main-armv7-default-job-04 15.0-CURRENT FreeBSD 15.0-CURRENT 1500014 arm
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 807 Aug 12  2023 /usr/ports/science/py-gsd/Makefile
Ports top last git commit: 43e3af5f576
Ports top unclean checkout: no
Port dir last git commit: 724c4354c16
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6
Host OSVERSION: 1500006
Jail OSVERSION: 1500014
Job Id: 04




!!! Jail is newer than host. (Jail: 1500014, Host: 1500006) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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PORT_FLAGS=
PKGENV=
FLAVOR=py39
MAKE_ARGS= FLAVOR=py39
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39/.cache  HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-gsd/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-gsd/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39/.cache  HOME=/wrkdirs/usr/ports/science/py-gsd/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-gsd/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-gsd/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  " BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -
s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.9  PYTHON_LIBDIR=lib/python3.9  PYTHON_PLATFORM=freebsd15  PYTHON_SITELIBDIR=lib/python3.9/site-packages  PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gsd"  EXAMPLESDIR="share/examples/gsd"  DATADIR="share/gsd"  WWWDIR="www/gsd"  ETCDIR="etc/gsd"
--End PLIST_SUB--

--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9  PYTHON_LIBDIR=/usr/local/lib/python3.9  PYTHON_PLATFORM=freebsd15  PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages  PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/gsd DOCSDIR=/usr/local/share/doc/gsd EXAMPLESDIR=/usr/local/share/examples/gsd  WWWDIR=/usr/local/www/gsd ETCDIR=/usr/local/etc/gsd
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
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data seg size           (kbytes, -d)  524288
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core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
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pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-gsd-3.1.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.9_1.pkg
[main-armv7-default-job-04] Installing pkg-1.20.9_1...
[main-armv7-default-job-04] Extracting pkg-1.20.9_1: .......... done
===>   py39-gsd-3.1.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-gsd-3.1.1
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-gsd-3.1.1 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-gsd-3.1.1 for building
=> SHA256 Checksum OK for gsd-3.1.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py39-gsd-3.1.1 for building
===>  Extracting for py39-gsd-3.1.1
=> SHA256 Checksum OK for gsd-3.1.1.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-gsd-3.1.1
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-gsd-3.1.1 depends on package: py39-numpy>=1.16,1<1.26,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg
[main-armv7-default-job-04] Installing py39-numpy-1.25.0_6,1...
[main-armv7-default-job-04] `-- Installing gcc13-13.2.0_4...
[main-armv7-default-job-04] |   `-- Installing binutils-2.40_5,1...
[main-armv7-default-job-04] |   | `-- Installing gettext-runtime-0.22.3_1...
[main-armv7-default-job-04] |   |   `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-04] |   |   `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-04] |   | `-- Extracting gettext-runtime-0.22.3_1: .......... done
[main-armv7-default-job-04] |   | `-- Installing zstd-1.5.5_1...
[main-armv7-default-job-04] |   |   `-- Installing liblz4-1.9.4_1,1...
[main-armv7-default-job-04] |   |   `-- Extracting liblz4-1.9.4_1,1: .......... done
[main-armv7-default-job-04] |   | `-- Extracting zstd-1.5.5_1: .......... done
[main-armv7-default-job-04] |   `-- Extracting binutils-2.40_5,1: .......... done
[main-armv7-default-job-04] |   `-- Installing gmp-6.3.0...
[main-armv7-default-job-04] |   `-- Extracting gmp-6.3.0: .......... done
[main-armv7-default-job-04] |   `-- Installing mpc-1.3.1_1...
[main-armv7-default-job-04] |   | `-- Installing mpfr-4.2.1,1...
[main-armv7-default-job-04] |   | `-- Extracting mpfr-4.2.1,1: .......... done
[main-armv7-default-job-04] |   `-- Extracting mpc-1.3.1_1: ......... done
[main-armv7-default-job-04] `-- Extracting gcc13-13.2.0_4: .......... done
[main-armv7-default-job-04] `-- Installing openblas-0.3.25,2...
[main-armv7-default-job-04] `-- Extracting openblas-0.3.25,2: .......... done
[main-armv7-default-job-04] `-- Installing py39-setuptools-63.1.0_1...
[main-armv7-default-job-04] |   `-- Installing python39-3.9.18_1...
[main-armv7-default-job-04] |   | `-- Installing libffi-3.4.4_1...
[main-armv7-default-job-04] |   | `-- Extracting libffi-3.4.4_1: .......... done
[main-armv7-default-job-04] |   | `-- Installing mpdecimal-2.5.1...
[main-armv7-default-job-04] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[main-armv7-default-job-04] |   | `-- Installing readline-8.2.7_1...
[main-armv7-default-job-04] |   | `-- Extracting readline-8.2.7_1: .......... done
[main-armv7-default-job-04] |   `-- Extracting python39-3.9.18_1: .......... done
[main-armv7-default-job-04] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[main-armv7-default-job-04] `-- Installing suitesparse-umfpack-6.3.2...
[main-armv7-default-job-04] |   `-- Installing suitesparse-amd-3.3.1...
[main-armv7-default-job-04] |   | `-- Installing suitesparse-config-7.6.0...
[main-armv7-default-job-04] |   | `-- Extracting suitesparse-config-7.6.0: .......... done
[main-armv7-default-job-04] |   `-- Extracting suitesparse-amd-3.3.1: .......... done
[main-armv7-default-job-04] |   `-- Installing suitesparse-camd-3.3.1...
[main-armv7-default-job-04] |   `-- Extracting suitesparse-camd-3.3.1: .......... done
[main-armv7-default-job-04] |   `-- Installing suitesparse-ccolamd-3.3.2...
[main-armv7-default-job-04] |   `-- Extracting suitesparse-ccolamd-3.3.2: .......... done
[main-armv7-default-job-04] |   `-- Installing suitesparse-cholmod-5.2.0...
[main-armv7-default-job-04] |   | `-- Installing suitesparse-colamd-3.3.2...
[main-armv7-default-job-04] |   | `-- Extracting suitesparse-colamd-3.3.2: .......... done
[main-armv7-default-job-04] |   `-- Extracting suitesparse-cholmod-5.2.0: .......... done
[main-armv7-default-job-04] `-- Extracting suitesparse-umfpack-6.3.2: .......... done
[main-armv7-default-job-04] Extracting py39-numpy-1.25.0_6,1: .......... done
=====
Message from gcc13-13.2.0_4:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc13

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python39-3.9.18_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   py39-gsd-3.1.1 depends on package: py39-numpy>=1.16,1<1.26,1 - found
===>   Returning to build of py39-gsd-3.1.1
===>   py39-gsd-3.1.1 depends on executable: cython-3.9 - not found
===>   Installing existing package /packages/All/py39-cython-0.29.37.pkg
[main-armv7-default-job-04] Installing py39-cython-0.29.37...
[main-armv7-default-job-04] Extracting py39-cython-0.29.37: .......... done
===>   py39-gsd-3.1.1 depends on executable: cython-3.9 - found
===>   Returning to build of py39-gsd-3.1.1
===>   py39-gsd-3.1.1 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-gsd-3.1.1 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py39-gsd-3.1.1
=>> Killing runaway build after 7200 seconds with no output