[package - main-armv7-default][science/py-spglib] Failed for py39-spglib-2.3.1_1 in build/runaway
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Date: Thu, 29 Feb 2024 05:16:30 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p43e3af5f5763_sf5f08e41aa/logs/py39-spglib-2.3.1_1.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p43e3af5f5763_sf5f08e41aa Log: =>> Building science/py-spglib build started at Thu Feb 29 03:16:18 UTC 2024 port directory: /usr/ports/science/py-spglib package name: py39-spglib-2.3.1_1 building for: FreeBSD main-armv7-default-job-02 15.0-CURRENT FreeBSD 15.0-CURRENT 1500014 arm maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1255 Feb 13 01:02 /usr/ports/science/py-spglib/Makefile Ports top last git commit: 43e3af5f576 Ports top unclean checkout: no Port dir last git commit: 8aafb5f26d6 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6 Host OSVERSION: 1500006 Jail OSVERSION: 1500014 Job Id: 02 !!! Jail is newer than host. (Jail: 1500014, Host: 1500006) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500014 UNAME_v=FreeBSD 15.0-CURRENT 1500014 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-1-g1e9f97d6 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-armv7-default/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-spglib/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-spglib/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- SETUPTOOLS_SCM_PRETEND_VERSION=2.3.1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-spglib/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-spglib/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-spglib/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 064 4" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/spglib" EXAMPLESDIR="share/examples/spglib" DATADIR="share/spglib" WWWDIR="www/spglib" ETCDIR="etc/spglib" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/spglib DOCSDIR=/usr/local/share/doc/spglib EXAMPLESDIR=/usr/local/share/examples/spglib WWWDIR=/usr/local/www/spglib ETCDIR=/usr/local/etc/spglib --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-spglib-2.3.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [main-armv7-default-job-02] Installing pkg-1.20.9_1... [main-armv7-default-job-02] Extracting pkg-1.20.9_1: .......... done ===> py39-spglib-2.3.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-spglib-2.3.1_1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-spglib-2.3.1_1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-spglib-2.3.1_1 for building => SHA256 Checksum OK for spglib-spglib-v2.3.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-spglib-2.3.1_1 for building ===> Extracting for py39-spglib-2.3.1_1 => SHA256 Checksum OK for spglib-spglib-v2.3.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-spglib-2.3.1_1 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-spglib-2.3.1_1 depends on package: py39-setuptools_scm>0 - not found ===> Installing existing package /packages/All/py39-setuptools_scm-6.4.2.pkg [main-armv7-default-job-02] Installing py39-setuptools_scm-6.4.2... [main-armv7-default-job-02] `-- Installing py39-packaging-23.2... [main-armv7-default-job-02] | `-- Installing python39-3.9.18_1... [main-armv7-default-job-02] | | `-- Installing gettext-runtime-0.22.3_1... [main-armv7-default-job-02] | | `-- Installing indexinfo-0.3.1... [main-armv7-default-job-02] | | `-- Extracting indexinfo-0.3.1: .... done [main-armv7-default-job-02] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done [main-armv7-default-job-02] | | `-- Installing libffi-3.4.4_1... [main-armv7-default-job-02] | | `-- Extracting libffi-3.4.4_1: .......... done [main-armv7-default-job-02] | | `-- Installing mpdecimal-2.5.1... [main-armv7-default-job-02] | | `-- Extracting mpdecimal-2.5.1: .......... done [main-armv7-default-job-02] | | `-- Installing readline-8.2.7_1... [main-armv7-default-job-02] | | `-- Extracting readline-8.2.7_1: .......... done [main-armv7-default-job-02] | `-- Extracting python39-3.9.18_1: .......... done [main-armv7-default-job-02] `-- Extracting py39-packaging-23.2: .......... done [main-armv7-default-job-02] `-- Installing py39-setuptools-63.1.0_1... [main-armv7-default-job-02] `-- Extracting py39-setuptools-63.1.0_1: .......... done [main-armv7-default-job-02] `-- Installing py39-tomli-2.0.1_2... [main-armv7-default-job-02] `-- Extracting py39-tomli-2.0.1_2: .......... done [main-armv7-default-job-02] Extracting py39-setuptools_scm-6.4.2: .......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-spglib-2.3.1_1 depends on package: py39-setuptools_scm>0 - found ===> Returning to build of py39-spglib-2.3.1_1 ===> py39-spglib-2.3.1_1 depends on package: py39-scikit-build-core>0 - not found ===> Installing existing package /packages/All/py39-scikit-build-core-0.7.1.pkg [main-armv7-default-job-02] Installing py39-scikit-build-core-0.7.1... [main-armv7-default-job-02] `-- Installing py39-exceptiongroup-1.2.0... [main-armv7-default-job-02] `-- Extracting py39-exceptiongroup-1.2.0: .......... done [main-armv7-default-job-02] `-- Installing py39-pathspec-0.12.1... [main-armv7-default-job-02] `-- Extracting py39-pathspec-0.12.1: .......... done [main-armv7-default-job-02] Extracting py39-scikit-build-core-0.7.1: .......... done ===> py39-spglib-2.3.1_1 depends on package: py39-scikit-build-core>0 - found ===> Returning to build of py39-spglib-2.3.1_1 ===> py39-spglib-2.3.1_1 depends on package: py39-pyproject-metadata>0 - not found ===> Installing existing package /packages/All/py39-pyproject-metadata-0.7.1.pkg [main-armv7-default-job-02] Installing py39-pyproject-metadata-0.7.1... [main-armv7-default-job-02] Extracting py39-pyproject-metadata-0.7.1: .......... done ===> py39-spglib-2.3.1_1 depends on package: py39-pyproject-metadata>0 - found ===> Returning to build of py39-spglib-2.3.1_1 ===> py39-spglib-2.3.1_1 depends on executable: cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [main-armv7-default-job-02] Installing cmake-core-3.28.3... [main-armv7-default-job-02] `-- Installing expat-2.6.0... [main-armv7-default-job-02] `-- Extracting expat-2.6.0: .......... done [main-armv7-default-job-02] `-- Installing jsoncpp-1.9.5... [main-armv7-default-job-02] `-- Extracting jsoncpp-1.9.5: .......... done [main-armv7-default-job-02] `-- Installing libuv-1.48.0... [main-armv7-default-job-02] `-- Extracting libuv-1.48.0: .......... done [main-armv7-default-job-02] `-- Installing rhash-1.4.4_1... [main-armv7-default-job-02] `-- Extracting rhash-1.4.4_1: .......... done [main-armv7-default-job-02] Extracting cmake-core-3.28.3: .......... done ===> py39-spglib-2.3.1_1 depends on executable: cmake - found ===> Returning to build of py39-spglib-2.3.1_1 ===> py39-spglib-2.3.1_1 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [main-armv7-default-job-02] Installing py39-numpy-1.25.0_6,1... [main-armv7-default-job-02] `-- Installing gcc13-13.2.0_4... [main-armv7-default-job-02] | `-- Installing binutils-2.40_5,1... [main-armv7-default-job-02] | | `-- Installing zstd-1.5.5_1... [main-armv7-default-job-02] | | `-- Installing liblz4-1.9.4_1,1... [main-armv7-default-job-02] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [main-armv7-default-job-02] | | `-- Extracting zstd-1.5.5_1: .......... done [main-armv7-default-job-02] | `-- Extracting binutils-2.40_5,1: .......... done [main-armv7-default-job-02] | `-- Installing gmp-6.3.0... [main-armv7-default-job-02] | `-- Extracting gmp-6.3.0: .......... done [main-armv7-default-job-02] | `-- Installing mpc-1.3.1_1... [main-armv7-default-job-02] | | `-- Installing mpfr-4.2.1,1... [main-armv7-default-job-02] | | `-- Extracting mpfr-4.2.1,1: .......... done [main-armv7-default-job-02] | `-- Extracting mpc-1.3.1_1: ......... done [main-armv7-default-job-02] `-- Extracting gcc13-13.2.0_4: .......... done [main-armv7-default-job-02] `-- Installing openblas-0.3.25,2... [main-armv7-default-job-02] `-- Extracting openblas-0.3.25,2: .......... done [main-armv7-default-job-02] `-- Installing suitesparse-umfpack-6.3.2... [main-armv7-default-job-02] | `-- Installing suitesparse-amd-3.3.1... [main-armv7-default-job-02] | | `-- Installing suitesparse-config-7.6.0... [main-armv7-default-job-02] | | `-- Extracting suitesparse-config-7.6.0: .......... done [main-armv7-default-job-02] | `-- Extracting suitesparse-amd-3.3.1: .......... done [main-armv7-default-job-02] | `-- Installing suitesparse-camd-3.3.1... [main-armv7-default-job-02] | `-- Extracting suitesparse-camd-3.3.1: .......... done [main-armv7-default-job-02] | `-- Installing suitesparse-ccolamd-3.3.2... [main-armv7-default-job-02] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done [main-armv7-default-job-02] | `-- Installing suitesparse-cholmod-5.2.0... [main-armv7-default-job-02] | | `-- Installing suitesparse-colamd-3.3.2... [main-armv7-default-job-02] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [main-armv7-default-job-02] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [main-armv7-default-job-02] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [main-armv7-default-job-02] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py39-spglib-2.3.1_1 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-spglib-2.3.1_1 ===> py39-spglib-2.3.1_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-spglib-2.3.1_1 depends on package: py39-build>=0 - not found ===> Installing existing package /packages/All/py39-build-1.0.3.pkg [main-armv7-default-job-02] Installing py39-build-1.0.3... [main-armv7-default-job-02] `-- Installing py39-pyproject_hooks-1.0.0_2... [main-armv7-default-job-02] `-- Extracting py39-pyproject_hooks-1.0.0_2: .......... done [main-armv7-default-job-02] Extracting py39-build-1.0.3: .......... done ===> py39-spglib-2.3.1_1 depends on package: py39-build>=0 - found ===> Returning to build of py39-spglib-2.3.1_1 ===> py39-spglib-2.3.1_1 depends on package: py39-installer>=0 - not found ===> Installing existing package /packages/All/py39-installer-0.7.0.pkg [main-armv7-default-job-02] Installing py39-installer-0.7.0... [main-armv7-default-job-02] Extracting py39-installer-0.7.0: .......... done ===> py39-spglib-2.3.1_1 depends on package: py39-installer>=0 - found ===> Returning to build of py39-spglib-2.3.1_1 =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-spglib-2.3.1_1 =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-spglib-2.3.1_1 * Getting build dependencies for wheel... * Building wheel... *** scikit-build-core 0.7.1 using CMake 3.28.3 (wheel) *** Configuring CMake... =>> Killing runaway build after 7200 seconds with no output