[package - main-armv7-default][science/py-h5py] Failed for py39-h5py-3.10.0 in build/runaway

From: <pkg-fallout_at_FreeBSD.org>
Date: Wed, 28 Feb 2024 23:04:29 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p43e3af5f5763_sf5f08e41aa/logs/py39-h5py-3.10.0.log
Build URL:      https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p43e3af5f5763_sf5f08e41aa
Log:

=>> Building science/py-h5py
build started at Wed Feb 28 21:04:18 UTC 2024
port directory: /usr/ports/science/py-h5py
package name: py39-h5py-3.10.0
building for: FreeBSD main-armv7-default-job-01 15.0-CURRENT FreeBSD 15.0-CURRENT 1500014 arm
maintained by: sunpoet@FreeBSD.org
Makefile datestamp: -rw-r--r--  1 root wheel 1185 Oct 19 01:02 /usr/ports/science/py-h5py/Makefile
Ports top last git commit: 43e3af5f576
Ports top unclean checkout: no
Port dir last git commit: b8e9cfa6341
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6
Host OSVERSION: 1500006
Jail OSVERSION: 1500014
Job Id: 01




!!! Jail is newer than host. (Jail: 1500014, Host: 1500006) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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===> The following configuration options are available for py39-h5py-3.10.0:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

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sunpoet@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

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--PLIST_SUB--
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BATCH=yes
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PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
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=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-h5py-3.10.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.20.9_1.pkg
[main-armv7-default-job-01] Installing pkg-1.20.9_1...
[main-armv7-default-job-01] Extracting pkg-1.20.9_1: .......... done
===>   py39-h5py-3.10.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-h5py-3.10.0
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-h5py-3.10.0 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-h5py-3.10.0 for building
=> SHA256 Checksum OK for h5py-3.10.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-h5py-3.10.0 for building
===>  Extracting for py39-h5py-3.10.0
=> SHA256 Checksum OK for h5py-3.10.0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-h5py-3.10.0
===>  Applying FreeBSD patches for py39-h5py-3.10.0 from /usr/ports/science/py-h5py/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-h5py-3.10.0 depends on package: py39-cython>=0.29.31<1 - not found
===>   Installing existing package /packages/All/py39-cython-0.29.37.pkg
[main-armv7-default-job-01] Installing py39-cython-0.29.37...
[main-armv7-default-job-01] `-- Installing py39-setuptools-63.1.0_1...
[main-armv7-default-job-01] |   `-- Installing python39-3.9.18_1...
[main-armv7-default-job-01] |   | `-- Installing gettext-runtime-0.22.3_1...
[main-armv7-default-job-01] |   |   `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-01] |   |   `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-01] |   | `-- Extracting gettext-runtime-0.22.3_1: .......... done
[main-armv7-default-job-01] |   | `-- Installing libffi-3.4.4_1...
[main-armv7-default-job-01] |   | `-- Extracting libffi-3.4.4_1: .......... done
[main-armv7-default-job-01] |   | `-- Installing mpdecimal-2.5.1...
[main-armv7-default-job-01] |   | `-- Extracting mpdecimal-2.5.1: .......... done
[main-armv7-default-job-01] |   | `-- Installing readline-8.2.7_1...
[main-armv7-default-job-01] |   | `-- Extracting readline-8.2.7_1: .......... done
[main-armv7-default-job-01] |   `-- Extracting python39-3.9.18_1: .......... done
[main-armv7-default-job-01] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[main-armv7-default-job-01] Extracting py39-cython-0.29.37: .......... done
=====
Message from python39-3.9.18_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py39-gdbm       databases/py-gdbm@py39
py39-sqlite3    databases/py-sqlite3@py39
py39-tkinter    x11-toolkits/py-tkinter@py39
===>   py39-h5py-3.10.0 depends on package: py39-cython>=0.29.31<1 - found
===>   Returning to build of py39-h5py-3.10.0
===>   py39-h5py-3.10.0 depends on package: py39-pkgconfig>=0,1 - not found
===>   Installing existing package /packages/All/py39-pkgconfig-1.5.5_1,1.pkg
[main-armv7-default-job-01] Installing py39-pkgconfig-1.5.5_1,1...
[main-armv7-default-job-01] `-- Installing pkgconf-2.0.3_2,1...
[main-armv7-default-job-01] `-- Extracting pkgconf-2.0.3_2,1: .......... done
[main-armv7-default-job-01] Extracting py39-pkgconfig-1.5.5_1,1: .......... done
===>   py39-h5py-3.10.0 depends on package: py39-pkgconfig>=0,1 - found
===>   Returning to build of py39-h5py-3.10.0
===>   py39-h5py-3.10.0 depends on package: py39-numpy>=1.17.3,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg
[main-armv7-default-job-01] Installing py39-numpy-1.25.0_6,1...
[main-armv7-default-job-01] `-- Installing gcc13-13.2.0_4...
[main-armv7-default-job-01] |   `-- Installing binutils-2.40_5,1...
[main-armv7-default-job-01] |   | `-- Installing zstd-1.5.5_1...
[main-armv7-default-job-01] |   |   `-- Installing liblz4-1.9.4_1,1...
[main-armv7-default-job-01] |   |   `-- Extracting liblz4-1.9.4_1,1: .......... done
[main-armv7-default-job-01] |   | `-- Extracting zstd-1.5.5_1: .......... done
[main-armv7-default-job-01] |   `-- Extracting binutils-2.40_5,1: .......... done
[main-armv7-default-job-01] |   `-- Installing gmp-6.3.0...
[main-armv7-default-job-01] |   `-- Extracting gmp-6.3.0: .......... done
[main-armv7-default-job-01] |   `-- Installing mpc-1.3.1_1...
[main-armv7-default-job-01] |   | `-- Installing mpfr-4.2.1,1...
[main-armv7-default-job-01] |   | `-- Extracting mpfr-4.2.1,1: .......... done
[main-armv7-default-job-01] |   `-- Extracting mpc-1.3.1_1: ......... done
[main-armv7-default-job-01] `-- Extracting gcc13-13.2.0_4: .......... done
[main-armv7-default-job-01] `-- Installing openblas-0.3.25,2...
[main-armv7-default-job-01] `-- Extracting openblas-0.3.25,2: .......... done
[main-armv7-default-job-01] `-- Installing suitesparse-umfpack-6.3.2...
[main-armv7-default-job-01] |   `-- Installing suitesparse-amd-3.3.1...
[main-armv7-default-job-01] |   | `-- Installing suitesparse-config-7.6.0...
[main-armv7-default-job-01] |   | `-- Extracting suitesparse-config-7.6.0: .......... done
[main-armv7-default-job-01] |   `-- Extracting suitesparse-amd-3.3.1: .......... done
[main-armv7-default-job-01] |   `-- Installing suitesparse-camd-3.3.1...
[main-armv7-default-job-01] |   `-- Extracting suitesparse-camd-3.3.1: .......... done
[main-armv7-default-job-01] |   `-- Installing suitesparse-ccolamd-3.3.2...
[main-armv7-default-job-01] |   `-- Extracting suitesparse-ccolamd-3.3.2: .......... done
[main-armv7-default-job-01] |   `-- Installing suitesparse-cholmod-5.2.0...
[main-armv7-default-job-01] |   | `-- Installing suitesparse-colamd-3.3.2...
[main-armv7-default-job-01] |   | `-- Extracting suitesparse-colamd-3.3.2: .......... done
[main-armv7-default-job-01] |   `-- Extracting suitesparse-cholmod-5.2.0: .......... done
[main-armv7-default-job-01] `-- Extracting suitesparse-umfpack-6.3.2: .......... done
[main-armv7-default-job-01] Extracting py39-numpy-1.25.0_6,1: .......... done
=====
Message from gcc13-13.2.0_4:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc13

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   py39-h5py-3.10.0 depends on package: py39-numpy>=1.17.3,1 - found
===>   Returning to build of py39-h5py-3.10.0
===>   py39-h5py-3.10.0 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-h5py-3.10.0 depends on file: /usr/local/bin/python3.9 - found
===>   py39-h5py-3.10.0 depends on package: pkgconf>=1.3.0_1 - found
===>   py39-h5py-3.10.0 depends on executable: cython-3.9 - found
===>   py39-h5py-3.10.0 depends on package: py39-setuptools>=63.1.0 - found
===>   py39-h5py-3.10.0 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-h5py-3.10.0 depends on shared library: libhdf5.so - not found
===>   Installing existing package /packages/All/hdf5-1.12.2_2,1.pkg
[main-armv7-default-job-01] Installing hdf5-1.12.2_2,1...
[main-armv7-default-job-01] `-- Installing libaec-1.1.2...
[main-armv7-default-job-01] `-- Extracting libaec-1.1.2: .......... done
[main-armv7-default-job-01] Extracting hdf5-1.12.2_2,1: .......... done
===>   py39-h5py-3.10.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===>   Returning to build of py39-h5py-3.10.0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py39-h5py-3.10.0
/usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
  warnings.warn(msg, _BetaConfiguration)
running config
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py39-h5py-3.10.0
/usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
  warnings.warn(msg, _BetaConfiguration)
running build
running build_py
creating build
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py
copying h5py/ipy_completer.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py
copying h5py/__init__.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py
copying h5py/version.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py
copying h5py/h5py_warnings.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/group.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/files.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/compat.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/__init__.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/dataset.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/base.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/datatype.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/selections.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/filters.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/vds.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/selections2.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/dims.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
copying h5py/_hl/attrs.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/_hl
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_file.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_file_alignment.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5f.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/conftest.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/common.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/__init__.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_errors.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_base.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_big_endian_file.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_filters.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_attrs.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_ros3.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_group.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_file_image.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5pl.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_objects.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_dataset_getitem.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5t.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_dataset_swmr.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_dataset.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_dtype.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5z.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5o.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_attribute_create.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_datatype.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_completions.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_attrs_data.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_dimension_scales.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_h5p.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_file2.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_slicing.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
copying h5py/tests/test_selections.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/data_files
copying h5py/tests/data_files/__init__.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/data_files
creating build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/test_vds
copying h5py/tests/test_vds/__init__.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/test_vds
copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/test_vds
copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/test_vds
copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/test_vds
copying h5py/tests/data_files/vlen_string_dset.h5 -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/data_files
copying h5py/tests/data_files/vlen_string_dset_utc.h5 -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/data_files
copying h5py/tests/data_files/vlen_string_s390x.h5 -> build/lib.freebsd-15.0-CURRENT-arm-cpython-39/h5py/tests/data_files
running build_ext
=>> Killing runaway build after 7200 seconds with no output