[package - main-powerpc64-default][biology/mmseqs2] Failed for MMseqs2-13.45111_2 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Wed, 28 Feb 2024 06:41:47 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul1/data/main-powerpc64-default/p3f853a69d83c_s78cc457123/logs/MMseqs2-13.45111_2.log
Build URL: https://pkg-status.freebsd.org/foul1/build.html?mastername=main-powerpc64-default&build=p3f853a69d83c_s78cc457123
Log:
=>> Building biology/mmseqs2
build started at Wed Feb 28 06:37:32 UTC 2024
port directory: /usr/ports/biology/mmseqs2
package name: MMseqs2-13.45111_2
building for: FreeBSD main-powerpc64-default-job-03 15.0-CURRENT FreeBSD 15.0-CURRENT 1500012 powerpc
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1126 Dec 29 2022 /usr/ports/biology/mmseqs2/Makefile
Ports top last git commit: 3f853a69d8
Ports top unclean checkout: no
Port dir last git commit: 25bd187bcf
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1
Host OSVERSION: 1500003
Jail OSVERSION: 1500012
Job Id: 03
!!! Jail is newer than host. (Jail: 1500012, Host: 1500003) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500012
UNAME_v=FreeBSD 15.0-CURRENT 1500012
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1
MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-powerpc64-default/03/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-powerpc64-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work/.cache HOME=/wrkdirs/usr/ports/biology/mmseqs2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mmseqs2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mmseqs2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work/.cache HOME=/wrkdirs/usr/ports/biology/mmseqs2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mmseqs2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mmseqs2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/mmseqs2/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -lpthread -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTAL
L_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/MMseqs2" EXAMPLESDIR="share/examples/MMseqs2" DATADIR="share/MMseqs2" WWWDIR="www/MMseqs2" ETCDIR="etc/MMseqs2"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/MMseqs2 DOCSDIR=/usr/local/share/doc/MMseqs2 EXAMPLESDIR=/usr/local/share/examples/MMseqs2 WWWDIR=/usr/local/www/MMseqs2 ETCDIR=/usr/local/etc/MMseqs2
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> MMseqs2-13.45111_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9_1.pkg
[main-powerpc64-default-job-03] Installing pkg-1.20.9_1...
[main-powerpc64-default-job-03] Extracting pkg-1.20.9_1: .......... done
===> MMseqs2-13.45111_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of MMseqs2-13.45111_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by MMseqs2-13.45111_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by MMseqs2-13.45111_2 for building
=> SHA256 Checksum OK for soedinglab-MMseqs2-13-45111_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by MMseqs2-13.45111_2 for building
===> Extracting for MMseqs2-13.45111_2
=> SHA256 Checksum OK for soedinglab-MMseqs2-13-45111_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for MMseqs2-13.45111_2
===> Applying FreeBSD patches for MMseqs2-13.45111_2 from /usr/ports/biology/mmseqs2/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> MMseqs2-13.45111_2 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.28.2.pkg
[main-powerpc64-default-job-03] Installing cmake-core-3.28.2...
[main-powerpc64-default-job-03] `-- Installing expat-2.5.0_1...
[main-powerpc64-default-job-03] `-- Extracting expat-2.5.0_1: .......... done
[main-powerpc64-default-job-03] `-- Installing jsoncpp-1.9.5...
[main-powerpc64-default-job-03] `-- Extracting jsoncpp-1.9.5: .......... done
[main-powerpc64-default-job-03] `-- Installing libuv-1.47.0...
[main-powerpc64-default-job-03] `-- Extracting libuv-1.47.0: .......... done
[main-powerpc64-default-job-03] `-- Installing rhash-1.4.4_1...
[main-powerpc64-default-job-03] | `-- Installing gettext-runtime-0.22.3_1...
[main-powerpc64-default-job-03] | | `-- Installing indexinfo-0.3.1...
[main-powerpc64-default-job-03] | | `-- Extracting indexinfo-0.3.1: .... done
[main-powerpc64-default-job-03] | `-- Extracting gettext-runtime-0.22.3_1: .......... done
[main-powerpc64-default-job-03] `-- Extracting rhash-1.4.4_1: .......... done
[main-powerpc64-default-job-03] Extracting cmake-core-3.28.2: .......... done
<snip>
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:27:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:978:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
978 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), a_.f32 == b_.f32);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1037:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1037 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 >= b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1096:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1096 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 > b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1155:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1155 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 <= b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1214:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1214 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 < b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1281:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1281 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 != b_.f32));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBConcat.cpp:2:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1603:60: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1603 | r_.i8 = HEDLEY_STATIC_CAST(__typeof__(r_.i8), (a_.i8 == b_.i8));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1636:24: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1636 | r_.i16 = (a_.i16 == b_.i16);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1669:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1669 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), a_.i32 == b_.i32);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1702:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1702 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 == b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1813:60: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1813 | r_.i8 = HEDLEY_STATIC_CAST(__typeof__(r_.i8), (a_.i8 < b_.i8));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1846:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1846 | r_.i16 = HEDLEY_STATIC_CAST(__typeof__(r_.i16), (a_.i16 < b_.i16));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1879:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1879 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.i32 < b_.i32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2022:60: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2022 | r_.i8 = HEDLEY_STATIC_CAST(__typeof__(r_.i8), (a_.i8 > b_.i8));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2055:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2055 | r_.i16 = HEDLEY_STATIC_CAST(__typeof__(r_.i16), (a_.i16 > b_.i16));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2088:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2088 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.i32 > b_.i32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBConcat.cpp:2:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:209:70: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
209 | mask_.i8 = HEDLEY_STATIC_CAST(__typeof__(mask_.i8), mask_.i8 < z);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:252:31: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
252 | mask_.i16 = mask_.i16 < z;
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:293:73: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
293 | mask_.i32 = HEDLEY_STATIC_CAST(__typeof__(mask_.i32), mask_.i32 < z);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:336:73: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
336 | mask_.i64 = HEDLEY_STATIC_CAST(__typeof__(mask_.i64), mask_.i64 < z);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
26 warnings generated.
[ 37% 85/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work
/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.
o -c /wrkdirs/usr/ports/biology/mmseqs2/work!
/MMseqs2-13-45111/src/commons/DBReader.cpp
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.cpp:1:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:27:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:978:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
978 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), a_.f32 == b_.f32);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1037:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1037 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 >= b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1096:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1096 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 > b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1155:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1155 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 <= b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1214:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1214 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 < b_.f32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse.h:1281:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1281 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.f32 != b_.f32));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.cpp:1:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1603:60: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1603 | r_.i8 = HEDLEY_STATIC_CAST(__typeof__(r_.i8), (a_.i8 == b_.i8));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1636:24: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1636 | r_.i16 = (a_.i16 == b_.i16);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1669:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1669 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), a_.i32 == b_.i32);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1702:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1702 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 == b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1813:60: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1813 | r_.i8 = HEDLEY_STATIC_CAST(__typeof__(r_.i8), (a_.i8 < b_.i8));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1846:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1846 | r_.i16 = HEDLEY_STATIC_CAST(__typeof__(r_.i16), (a_.i16 < b_.i16));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1879:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1879 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.i32 < b_.i32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2022:60: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2022 | r_.i8 = HEDLEY_STATIC_CAST(__typeof__(r_.i8), (a_.i8 > b_.i8));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2055:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2055 | r_.i16 = HEDLEY_STATIC_CAST(__typeof__(r_.i16), (a_.i16 > b_.i16));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2088:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2088 | r_.i32 = HEDLEY_STATIC_CAST(__typeof__(r_.i32), (a_.i32 > b_.i32));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64));
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64));
| ^
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.cpp:1:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7:
In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321:
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:209:70: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
209 | mask_.i8 = HEDLEY_STATIC_CAST(__typeof__(mask_.i8), mask_.i8 < z);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:252:31: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
252 | mask_.i16 = mask_.i16 < z;
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:293:73: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
293 | mask_.i32 = HEDLEY_STATIC_CAST(__typeof__(mask_.i32), mask_.i32 < z);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:336:73: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
336 | mask_.i64 = HEDLEY_STATIC_CAST(__typeof__(mask_.i64), mask_.i64 < z);
| ^
/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat]
573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64);
| ^
26 warnings generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/mmseqs2