From nobody Mon Feb 26 21:49:39 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TkDmN3kqHz5CFhW for ; Mon, 26 Feb 2024 21:49:40 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TkDmN25xxz4L2l for ; Mon, 26 Feb 2024 21:49:40 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1708984180; a=rsa-sha256; cv=none; b=omQhv+DaNzfghgXfexcZcrhlDJ+bre+hzzaPXHclO0Sp5CFwa/5TkMbB3hgus67MIl+zPL LIc2LEA1/6UkyrAECYv/N0xzp5q++nHWGK9EL5COvMYzYOKbdMxG2iyIhSGuikk2+9HB+2 HLfY8sQeFmGaqSiXR9Z26MIJ+IhOKo7DnmU/eeycmzIJJ7vSkdDddLnXiy4n8PHTKQsSxi XEJI4wdDY9ZjNLl1tNz39tXwZ1OWH3O5iBY2WiF6FLhAtnn/c54FnUw+Vi/JS/3yfVJ1k+ Rv9mdwxB0PM1XDo3eJ3EGBol9U28M5eTmtvv4SNxf0GvtIhkjlFUVadkE+6/1g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1708984180; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=ZimcYc3PWEtcSgdY/5YyDyFkddjwQrJvqFz7cp9BY+Y=; b=ww5hV/X46EO3o9Opo4KzufN0YaP7UcSsYQNbk7MLhD+P6If0MK7mD3Nb8ihi9S0MZ8X8s4 e8nZ0HJAq+YxebHMvoikohQO+Su6lan0EBMWUDnJgnPjnADRaoNsSpE4RnC+N704SRT+AY 1Y8Hzp15jMOpoEkjhlfxcDTKaEcS6BPQaFc+Sf8nVF1x3xz2/bwfJSNN/ichfQ0nK4wjCl 4v793PCI9dvRzD6rBOagR2CbpcQQR5L2g7M/TgLgYKVmSY0eKjeQvZ+3CQ3K/l7YIcuP0h OMIO7ELGxe8lSftFAsWwMgTkfAWDD5oXqXj2F7n34HDSFHf7KlPsTnI22P/KQg== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4TkDmN0qQpzlfj for ; Mon, 26 Feb 2024 21:49:40 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 41QLneKR004778 for ; Mon, 26 Feb 2024 21:49:40 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 41QLnda0004773; Mon, 26 Feb 2024 21:49:39 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 26 Feb 2024 21:49:39 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202402262149.41QLnda0004773@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - main-powerpc64le-default][biology/mmseqs2] Failed for MMseqs2-13.45111_2 in build List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/p5d5d54cd608d_s4347ef6050/logs/MMseqs2-13.45111_2.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=p5d5d54cd608d_s4347ef6050 Log: =>> Building biology/mmseqs2 build started at Mon Feb 26 21:43:26 UTC 2024 port directory: /usr/ports/biology/mmseqs2 package name: MMseqs2-13.45111_2 building for: FreeBSD main-powerpc64le-default-job-01 15.0-CURRENT FreeBSD 15.0-CURRENT 1500008 powerpc maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1126 Dec 29 2022 /usr/ports/biology/mmseqs2/Makefile Ports top last git commit: 5d5d54cd60 Ports top unclean checkout: no Port dir last git commit: 687b6f92f4 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6 Host OSVERSION: 1500000 Jail OSVERSION: 1500008 Job Id: 01 !!! Jail is newer than host. (Jail: 1500008, Host: 1500000) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500008 UNAME_v=FreeBSD 15.0-CURRENT 1500008 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-1-g1e9f97d6 MASTERMNT=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-powerpc64le-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-powerpc64le-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work/.cache HOME=/wrkdirs/usr/ports/biology/mmseqs2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mmseqs2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mmseqs2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mmseqs2/work/.cache HOME=/wrkdirs/usr/ports/biology/mmseqs2/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mmseqs2/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mmseqs2/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/mmseqs2/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -lpthread -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTAL L_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/MMseqs2" EXAMPLESDIR="share/examples/MMseqs2" DATADIR="share/MMseqs2" WWWDIR="www/MMseqs2" ETCDIR="etc/MMseqs2" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/MMseqs2 DOCSDIR=/usr/local/share/doc/MMseqs2 EXAMPLESDIR=/usr/local/share/examples/MMseqs2 WWWDIR=/usr/local/www/MMseqs2 ETCDIR=/usr/local/etc/MMseqs2 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> MMseqs2-13.45111_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [main-powerpc64le-default-job-01] Installing pkg-1.20.9_1... [main-powerpc64le-default-job-01] Extracting pkg-1.20.9_1: .......... done ===> MMseqs2-13.45111_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of MMseqs2-13.45111_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by MMseqs2-13.45111_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by MMseqs2-13.45111_2 for building => SHA256 Checksum OK for soedinglab-MMseqs2-13-45111_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by MMseqs2-13.45111_2 for building ===> Extracting for MMseqs2-13.45111_2 => SHA256 Checksum OK for soedinglab-MMseqs2-13-45111_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for MMseqs2-13.45111_2 ===> Applying FreeBSD patches for MMseqs2-13.45111_2 from /usr/ports/biology/mmseqs2/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> MMseqs2-13.45111_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [main-powerpc64le-default-job-01] Installing cmake-core-3.28.3... [main-powerpc64le-default-job-01] `-- Installing expat-2.6.0... [main-powerpc64le-default-job-01] `-- Extracting expat-2.6.0: .......... done [main-powerpc64le-default-job-01] `-- Installing jsoncpp-1.9.5... [main-powerpc64le-default-job-01] `-- Extracting jsoncpp-1.9.5: .......... done [main-powerpc64le-default-job-01] `-- Installing libuv-1.48.0... [main-powerpc64le-default-job-01] `-- Extracting libuv-1.48.0: .......... done [main-powerpc64le-default-job-01] `-- Installing rhash-1.4.4_1... [main-powerpc64le-default-job-01] | `-- Installing gettext-runtime-0.22.3_1... [main-powerpc64le-default-job-01] | | `-- Installing indexinfo-0.3.1... [main-powerpc64le-default-job-01] | | `-- Extracting indexinfo-0.3.1: .... done [main-powerpc64le-default-job-01] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [main-powerpc64le-default-job-01] `-- Extracting rhash-1.4.4_1: .......... done [main-powerpc64le-default-job-01] Extracting cmake-core-3.28.3: .......... done 2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64)); | ^ In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/clustering/ClusteringAlgorithms.cpp:1: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/clustering/ClusteringAlgorithms.h:13: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64); | ^ 6 warnings generated. [ 35% 82/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work /MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/Applica tion.cpp.o -c /wrkdirs/usr/ports/biology/mms! eqs2/work/MMseqs2-13-45111/src/commons/Application.cpp In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Application.cpp:4: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment/DistanceCalculator.h:8: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64)); | ^ In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Application.cpp:4: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment/DistanceCalculator.h:8: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64); | ^ 6 warnings generated. [ 35% 83/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work /MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o - c /wrkdirs/usr/ports/biology/mmseqs2/work/MM! seqs2-13-45111/src/commons/Command.cpp [ 35% 84/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work /MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatri x.cpp.o -c /wrkdirs/usr/ports/biology/mmseqs! 2/work/MMseqs2-13-45111/src/commons/BaseMatrix.cpp In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/BaseMatrix.cpp:4: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64)); | ^ In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/BaseMatrix.cpp:4: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64); | ^ 6 warnings generated. [ 36% 85/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work /MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/Com mandCaller.cpp.o -c /wrkdirs/usr/ports/biolo! gy/mmseqs2/work/MMseqs2-13-45111/src/commons/CommandCaller.cpp FAILED: src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45 111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp .o -c /wrkdirs/usr/ports/biology/mmseqs2/wor! k/MMseqs2-13-45111/src/commons/CommandCaller.cpp Attributes 'zeroext and signext' are incompatible! ptr @omp_get_proc_bind fatal error: error in backend: Broken module found, compilation aborted! PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. Stack dump: 0. Program arguments: /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmse qs2/work/MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/common s/CommandCaller.cpp.o -c /wrkdirs/usr/ports/! biology/mmseqs2/work/MMseqs2-13-45111/src/commons/CommandCaller.cpp 1. parser at end of file 2. Code generation #0 0x00000000161d1aec (/usr/bin/c+++0x161d1aec) #1 0x00000000161cf330 (/usr/bin/c+++0x161cf330) #2 0x000000001617d254 (/usr/bin/c+++0x1617d254) #3 0x000000001617d1bc (/usr/bin/c+++0x1617d1bc) #4 0x00000000161b72e0 (/usr/bin/c+++0x161b72e0) #5 0x0000000011f79de0 (/usr/bin/c+++0x11f79de0) #6 0x0000000016188c58 (/usr/bin/c+++0x16188c58) #7 0x0000000016188aec (/usr/bin/c+++0x16188aec) #8 0x0000000015c2a08c (/usr/bin/c+++0x15c2a08c) #9 0x0000000015b83068 (/usr/bin/c+++0x15b83068) #10 0x0000000015b7b2c8 (/usr/bin/c+++0x15b7b2c8) #11 0x0000000012bef114 (/usr/bin/c+++0x12bef114) #12 0x0000000012fed098 (/usr/bin/c+++0x12fed098) #13 0x000000001383b760 (/usr/bin/c+++0x1383b760) #14 0x0000000012ed3a20 (/usr/bin/c+++0x12ed3a20) #15 0x0000000012fea4dc (/usr/bin/c+++0x12fea4dc) #16 0x0000000012ed301c (/usr/bin/c+++0x12ed301c) #17 0x0000000012e3e7c0 (/usr/bin/c+++0x12e3e7c0) #18 0x0000000012fe3790 (/usr/bin/c+++0x12fe3790) #19 0x0000000011f79378 (/usr/bin/c+++0x11f79378) #20 0x0000000011f8ad58 (/usr/bin/c+++0x11f8ad58) #21 0x0000000012c9bdf8 (/usr/bin/c+++0x12c9bdf8) #22 0x000000001617d118 (/usr/bin/c+++0x1617d118) #23 0x0000000012c9afe4 (/usr/bin/c+++0x12c9afe4) #24 0x0000000012c51c98 (/usr/bin/c+++0x12c51c98) #25 0x0000000012c5205c (/usr/bin/c+++0x12c5205c) #26 0x0000000012c71714 (/usr/bin/c+++0x12c71714) #27 0x0000000011f8a44c (/usr/bin/c+++0x11f8a44c) #28 0x0000000011f86d54 (/usr/bin/c+++0x11f86d54) #29 0x0000000818a784e8 __libc_start1 (/lib/libc.so.7+0x9a4e8) #30 0x0000000011f78a30 (/usr/bin/c+++0x11f78a30) c++: error: clang frontend command failed with exit code 70 (use -v to see invocation) FreeBSD clang version 17.0.6 (https://github.com/llvm/llvm-project.git llvmorg-17.0.6-0-g6009708b4367) Target: powerpc64le-unknown-freebsd15.0 Thread model: posix InstalledDir: /usr/bin c++: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: c++: note: diagnostic msg: /tmp/CommandCaller-3bfed6.cpp c++: note: diagnostic msg: /tmp/CommandCaller-3bfed6.sh c++: note: diagnostic msg: ******************** [ 36% 85/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work /MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp. o -c /wrkdirs/usr/ports/biology/mmseqs2/work! /MMseqs2-13-45111/src/commons/DBConcat.cpp In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBConcat.cpp:2: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64)); | ^ In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBConcat.cpp:2: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64); | ^ 6 warnings generated. [ 37% 85/228] /usr/bin/c++ -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/usr/local/include -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/tinyexpr -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/microtar -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/gzstream -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/alp -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/cacode -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/ksw2 -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/xxhash -I/wrkdirs/usr/ports/biology/mmseqs2/work/.build/generated -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/alignment -I/wrkdirs/usr/ports/biology/mmseqs2/work /MMseqs2-13-45111/src/clustering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/multihit -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/prefiltering -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/linclust -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/taxonomy -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/util -I/wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_GNU_SOURCE=1 -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp. o -c /wrkdirs/usr/ports/biology/mmseqs2/work! /MMseqs2-13-45111/src/commons/DBReader.cpp In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.cpp:1: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:31: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/ssse3.h:30: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse3.h:30: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1756:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1756 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 != b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1906:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1906 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 < b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:1960:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 1960 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 <= b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2115:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2115 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 > b_.f64)); | ^ /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse2.h:2171:63: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 2171 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), (a_.f64 >= b_.f64)); | ^ In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.cpp:1: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/DBReader.h:13: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/Sequence.h:11: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/src/commons/ScoreMatrix.h:7: In file included from /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simd/simd.h:321: /wrkdirs/usr/ports/biology/mmseqs2/work/MMseqs2-13-45111/lib/simde/simde/x86/sse4.1.h:573:62: warning: Current handling of vector bool and vector pixel types in this context are deprecated. The default behaviour will soon change to that implied by the '-altivec-compat=xl' option [-Wdeprecated-altivec-src-compat] 573 | r_.i64 = HEDLEY_STATIC_CAST(__typeof__(r_.i64), a_.i64 == b_.i64); | ^ 6 warnings generated. ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/mmseqs2