[package - 140amd64-default][biology/seaview] Failed for seaview-5.0.5_2,1 in package
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Date: Mon, 26 Feb 2024 15:03:40 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bofh@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy12/data/140amd64-default/43e3af5f5763/logs/seaview-5.0.5_2,1.log Build URL: https://pkg-status.freebsd.org/beefy12/build.html?mastername=140amd64-default&build=43e3af5f5763 Log: =>> Building biology/seaview build started at Mon Feb 26 15:03:05 UTC 2024 port directory: /usr/ports/biology/seaview package name: seaview-5.0.5_2,1 building for: FreeBSD 140amd64-default-job-06 14.0-RELEASE-p5 FreeBSD 14.0-RELEASE-p5 amd64 maintained by: bofh@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1498 Jan 13 01:02 /usr/ports/biology/seaview/Makefile Ports top last git commit: 43e3af5f57 Ports top unclean checkout: no Port dir last git commit: d4329229fb Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6 Host OSVERSION: 1500006 Jail OSVERSION: 1400097 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RELEASE-p5 UNAME_r=14.0-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-1-g1e9f97d6 MASTERMNT=/usr/local/poudriere/data/.m/140amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140amd64-default/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=140amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- bofh@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seaview/work/.cache HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seaview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- HELPFILE='-DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\"' PHYMLNAME='-DPHYMLNAME=\"phyml\"' IFLTK='-I/usr/local/include' LFLTK='-L/usr/local/lib' USE_XFT='-DUSE_XFT' OPT="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seaview/work/.cache HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seaview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-stro ng " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seaview" EXAMPLESDIR="share/examples/seaview" DATADIR="share/seaview" WWWDIR="www/seaview" ETCDIR="etc/seaview" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seaview DOCSDIR=/usr/local/share/doc/seaview EXAMPLESDIR=/usr/local/share/examples/seaview WWWDIR=/usr/local/www/seaview ETCDIR=/usr/local/etc/seaview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 seaview-5.0.5_2,1: Makefile warning: in desktop entry #1 (seaview): category Biology is not a valid desktop category ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [140amd64-default-job-06] Installing pkg-1.20.9_1... [140amd64-default-job-06] Extracting pkg-1.20.9_1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seaview-5.0.5_2,1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 seaview-5.0.5_2,1: Makefile warning: in desktop entry #1 (seaview): category Science is not a valid desktop category ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-5.0.5_2,1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-5.0.5_2,1 for building => SHA256 Checksum OK for seaview_5.0.5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 seaview-5.0.5_2,1: Makefile warning: in desktop entry #1 (seaview): category Biology is not a valid desktop category ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seaview-5.0.5_2,1 for building ===> Extracting for seaview-5.0.5_2,1 => SHA256 Checksum OK for seaview_5.0.5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seaview-5.0.5_2,1 /usr/bin/sed -i.bak -e 's|^\(CC\) |#\1 | ; s|-ldl || ; s|^\(CXX\) |#\1 |' /wrkdirs/usr/ports/biology/seaview/work/seaview/Makefile echo 'boolean javarun;' >> /wrkdirs/usr/ports/biology/seaview/work/seaview/csrc/phylip.c =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_3.pkg [140amd64-default-job-06] Installing gmake-4.3_3... [140amd64-default-job-06] `-- Installing gettext-runtime-0.22.3_1... [140amd64-default-job-06] | `-- Installing indexinfo-0.3.1... [140amd64-default-job-06] | `-- Extracting indexinfo-0.3.1: .... done [140amd64-default-job-06] `-- Extracting gettext-runtime-0.22.3_1: .......... done [140amd64-default-job-06] Extracting gmake-4.3_3: .......... done ===> seaview-5.0.5_2,1 depends on package: gmake>=4.3 - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.8.7_1,1.pkg [140amd64-default-job-06] Installing libX11-1.8.7_1,1... [140amd64-default-job-06] `-- Installing libxcb-1.15_2... [140amd64-default-job-06] | `-- Installing libXau-1.0.9_1... [140amd64-default-job-06] | `-- Extracting libXau-1.0.9_1: .......... done [140amd64-default-job-06] | `-- Installing libXdmcp-1.1.3... [140amd64-default-job-06] | | `-- Installing xorgproto-2023.2... [140amd64-default-job-06] | | `-- Extracting xorgproto-2023.2: .......... done [140amd64-default-job-06] | `-- Extracting libXdmcp-1.1.3: ......... done [140amd64-default-job-06] `-- Extracting libxcb-1.15_2: .......... done [140amd64-default-job-06] Extracting libX11-1.8.7_1,1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - not found ===> Installing existing package /packages/All/libXcursor-1.2.0_2.pkg [140amd64-default-job-06] Installing libXcursor-1.2.0_2... [140amd64-default-job-06] `-- Installing libXfixes-6.0.0_1... [140amd64-default-job-06] `-- Extracting libXfixes-6.0.0_1: .......... done [140amd64-default-job-06] `-- Installing libXrender-0.9.10_2... [140amd64-default-job-06] `-- Extracting libXrender-0.9.10_2: .......... done [140amd64-default-job-06] Extracting libXcursor-1.2.0_2: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Installing existing package /packages/All/libXext-1.3.6,1.pkg [140amd64-default-job-06] Installing libXext-1.3.6,1... [140amd64-default-job-06] Extracting libXext-1.3.6,1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xfixes.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - not found ===> Installing existing package /packages/All/libXft-2.3.7_1.pkg [140amd64-default-job-06] Installing libXft-2.3.7_1... [140amd64-default-job-06] `-- Installing fontconfig-2.15.0_2,1... [140amd64-default-job-06] | `-- Installing expat-2.6.0... [140amd64-default-job-06] | `-- Extracting expat-2.6.0: .......... done [140amd64-default-job-06] | `-- Installing freetype2-2.13.2... [140amd64-default-job-06] | | `-- Installing brotli-1.1.0,1... [140amd64-default-job-06] | | `-- Extracting brotli-1.1.0,1: .......... done [140amd64-default-job-06] | | `-- Installing png-1.6.42... [140amd64-default-job-06] | | `-- Extracting png-1.6.42: .......... done [140amd64-default-job-06] | `-- Extracting freetype2-2.13.2: .......... done [140amd64-default-job-06] `-- Extracting fontconfig-2.15.0_2,1: .......... done [140amd64-default-job-06] Extracting libXft-2.3.7_1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from freetype2-2.13.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - not found ===> Installing existing package /packages/All/libXinerama-1.1.4_3,1.pkg [140amd64-default-job-06] Installing libXinerama-1.1.4_3,1... [140amd64-default-job-06] Extracting libXinerama-1.1.4_3,1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on shared library: libfltk.so - not found ===> Installing existing package /packages/All/fltk-1.3.9_1.pkg [140amd64-default-job-06] Installing fltk-1.3.9_1... [140amd64-default-job-06] `-- Installing jpeg-turbo-3.0.2... [140amd64-default-job-06] `-- Extracting jpeg-turbo-3.0.2: .......... done [140amd64-default-job-06] `-- Installing libGLU-9.0.2_2... [140amd64-default-job-06] | `-- Installing libglvnd-1.7.0... [140amd64-default-job-06] | `-- Extracting libglvnd-1.7.0: .......... done [140amd64-default-job-06] `-- Extracting libGLU-9.0.2_2: ..... done [140amd64-default-job-06] Extracting fltk-1.3.9_1: .......... done ===> seaview-5.0.5_2,1 depends on shared library: libfltk.so - found (/usr/local/lib/libfltk.so) ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> seaview-5.0.5_2,1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> seaview-5.0.5_2,1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for seaview-5.0.5_2,1 =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for seaview-5.0.5_2,1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/seaview/work/seaview' c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/raa_acnuc.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/parser.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/md5.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/zsockr.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/misc_acnuc.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/dnapars.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/protpars.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/seq.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phylip.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/lwl.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/bionj.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phyml_util.c c++ -o seaview -fstack-protector-strong seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -lpthread -lz -Wl,-z,muldefs gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/seaview/work/seaview' =========================================================================== =======================<phase: run-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xfixes.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found =========================================================================== =======================<phase: stage >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for seaview-5.0.5_2,1 ===> Generating temporary packing list (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -s -m 555 seaview /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/bin) (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -m 444 seaview.1 /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/man/man1) /bin/mkdir -p /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/seaview (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -m 0644 seaview.html /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/seaview) (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -m 0644 seaview.xpm /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/pixmaps) ====> Compressing man pages (compress-man) =========================================================================== =======================<phase: package >============================ ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-02-26T15:03:05+0000' 'PKG_NOTE_ports_top_git_hash=43e3af5f57' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=d4329229fb' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.1-1-g1e9f97d6' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for seaview-5.0.5_2,1 ===> Building seaview-5.0.5_2,1 pkg-static: Unable to access file /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/pixmaps/seaview.xpm:Not a directory *** Error code 1 Stop. make: stopped in /usr/ports/biology/seaview