[package - 132powerpc64le-quarterly][biology/iqtree] Failed for iqtree-2.2.2.7 in build
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Date: Tue, 20 Feb 2024 05:52:50 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jrm@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/foul2/data/132powerpc64le-quarterly/fdf998f5d103/logs/iqtree-2.2.2.7.log
Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=132powerpc64le-quarterly&build=fdf998f5d103
Log:
=>> Building biology/iqtree
build started at Tue Feb 20 05:51:18 UTC 2024
port directory: /usr/ports/biology/iqtree
package name: iqtree-2.2.2.7
building for: FreeBSD 132powerpc64le-quarterly-job-18 13.2-RELEASE FreeBSD 13.2-RELEASE powerpc
maintained by: jrm@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1183 Jan 6 01:03 /usr/ports/biology/iqtree/Makefile
Ports top last git commit: fdf998f5d
Ports top unclean checkout: no
Port dir last git commit: 756e18783
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-1-g1e9f97d6
Host OSVERSION: 1500000
Jail OSVERSION: 1302001
Job Id: 18
---Begin Environment---
SHELL=/bin/csh
OSVERSION=1302001
UNAME_v=FreeBSD 13.2-RELEASE
UNAME_r=13.2-RELEASE
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MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
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HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
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LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-1-g1e9f97d6
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LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/132powerpc64le-quarterly/18/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=132powerpc64le-quarterly
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POUDRIERE_PKGNAME=poudriere-git-3.4.1-1-g1e9f97d6
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for iqtree-2.2.2.7:
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
jrm@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iqtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/iqtree/work/.cache HOME=/wrkdirs/usr/ports/biology/iqtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/iqtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/iqtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/iqtree/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install
-s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/iqtree" EXAMPLESDIR="share/examples/iqtree" DATADIR="share/iqtree" WWWDIR="www/iqtree" ETCDIR="etc/iqtree"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/iqtree DOCSDIR=/usr/local/share/doc/iqtree EXAMPLESDIR=/usr/local/share/examples/iqtree WWWDIR=/usr/local/www/iqtree ETCDIR=/usr/local/etc/iqtree
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> iqtree-2.2.2.7 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.20.9.pkg
[132powerpc64le-quarterly-job-18] Installing pkg-1.20.9...
[132powerpc64le-quarterly-job-18] Extracting pkg-1.20.9: .......... done
===> iqtree-2.2.2.7 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of iqtree-2.2.2.7
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by iqtree-2.2.2.7 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by iqtree-2.2.2.7 for building
=> SHA256 Checksum OK for iqtree-iqtree2-v2.2.2.7_GH0.tar.gz.
=> SHA256 Checksum OK for tothuhien-lsd2-26ba127_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by iqtree-2.2.2.7 for building
===> Extracting for iqtree-2.2.2.7
=> SHA256 Checksum OK for iqtree-iqtree2-v2.2.2.7_GH0.tar.gz.
=> SHA256 Checksum OK for tothuhien-lsd2-26ba127_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for iqtree-2.2.2.7
===> Applying FreeBSD patches for iqtree-2.2.2.7 from /usr/ports/biology/iqtree/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> iqtree-2.2.2.7 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.28.1.pkg
[132powerpc64le-quarterly-job-18] Installing cmake-core-3.28.1...
[132powerpc64le-quarterly-job-18] `-- Installing expat-2.5.0...
[132powerpc64le-quarterly-job-18] `-- Extracting expat-2.5.0: .......... done
[132powerpc64le-quarterly-job-18] `-- Installing jsoncpp-1.9.5...
[132powerpc64le-quarterly-job-18] `-- Extracting jsoncpp-1.9.5: .......... done
[132powerpc64le-quarterly-job-18] `-- Installing libuv-1.47.0...
[132powerpc64le-quarterly-job-18] `-- Extracting libuv-1.47.0: .......... done
[132powerpc64le-quarterly-job-18] `-- Installing rhash-1.4.4...
[132powerpc64le-quarterly-job-18] | `-- Installing gettext-runtime-0.22.3...
[132powerpc64le-quarterly-job-18] | | `-- Installing indexinfo-0.3.1...
[132powerpc64le-quarterly-job-18] | | `-- Extracting indexinfo-0.3.1: .... done
[132powerpc64le-quarterly-job-18] | `-- Extracting gettext-runtime-0.22.3: .......... done
[132powerpc64le-quarterly-job-18] `-- Extracting rhash-1.4.4: .......... done
[132powerpc64le-quarterly-job-18] Extracting cmake-core-3.28.1: .......... done
===> iqtree-2.2.2.7 depends on file: /usr/local/bin/cmake - found
===> Returning to build of iqtree-2.2.2.7
===> iqtree-2.2.2.7 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.11.1,2.pkg
[132powerpc64le-quarterly-job-18] Installing ninja-1.11.1,2...
<snip>
static inline Vec4f exponent_f(Vec4f const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:32: error: unknown type name 'Vec4f'
static inline Vec4f exponent_f(Vec4f const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:681:11: error: unknown type name 'vm_ufi'; did you mean 'vm_udi'?
const vm_ufi upow2_23 = {pow2_23};
^~~~~~
vm_udi
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:667:7: note: 'vm_udi' declared here
union vm_udi {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:682:5: error: unknown type name 'Vec4ui'
Vec4ui a = reinterpret_i(x); // bit-cast x to integer
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:683:5: error: unknown type name 'Vec4ui'
Vec4ui b = a >> 23; // shift down exponent to low bits
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:5: error: unknown type name 'Vec4ui'
Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:20: error: use of undeclared identifier 'Vec4ui'
Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:685:5: error: unknown type name 'Vec4f'
Vec4f d = reinterpret_f(c); // bit-cast back to double
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:686:5: error: unknown type name 'Vec4f'
Vec4f e = d - (pow2_23 + bias); // subtract magic number and bias
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:15: error: unknown type name 'Vec2d'
static inline Vec2d exponent_f(Vec2d const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:32: error: unknown type name 'Vec2d'
static inline Vec2d exponent_f(Vec2d const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:700:5: error: unknown type name 'Vec2uq'
Vec2uq a = reinterpret_i(x); // bit-cast x to integer
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:701:5: error: unknown type name 'Vec2uq'
Vec2uq b = a >> 52; // shift down exponent to low bits
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:702:5: error: unknown type name 'Vec2uq'
Vec2uq c = b | Vec2uq(upow2_52.i); // insert new exponent
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[ 0% 3/286] /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -mfma -MD -MT CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -MF CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o.d -o CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp
FAILED: CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o
/usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -mfma -MD -MT CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -MF CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o.d -o CMakeFiles/kernelfma.dir/tree/phylokernelfma.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp
c++: warning: argument unused during compilation: '-mavx' [-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-mfma' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp:9:
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectorclass.h:38:4: error: Please compile for the SSE2 instruction set or higher
#error Please compile for the SSE2 instruction set or higher
^
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp:10:
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38:
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:8: error: unknown type name 'Vec2d'
inline Vec2d infinite_vec<Vec2d>() {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d'
inline Vec2d infinite_vec<Vec2d>() {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d'
inline Vec2d nan_vec<Vec2d>(int n) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d'
inline Vec2d nan_vec<Vec2d>(int n) {
^
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylokernelfma.cpp:10:
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:15: error: unknown type name 'Vec4f'
static inline Vec4f exponent_f(Vec4f const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:32: error: unknown type name 'Vec4f'
static inline Vec4f exponent_f(Vec4f const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:681:11: error: unknown type name 'vm_ufi'; did you mean 'vm_udi'?
const vm_ufi upow2_23 = {pow2_23};
^~~~~~
vm_udi
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:667:7: note: 'vm_udi' declared here
union vm_udi {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:682:5: error: unknown type name 'Vec4ui'
Vec4ui a = reinterpret_i(x); // bit-cast x to integer
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:683:5: error: unknown type name 'Vec4ui'
Vec4ui b = a >> 23; // shift down exponent to low bits
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:5: error: unknown type name 'Vec4ui'
Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:20: error: use of undeclared identifier 'Vec4ui'
Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:685:5: error: unknown type name 'Vec4f'
Vec4f d = reinterpret_f(c); // bit-cast back to double
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:686:5: error: unknown type name 'Vec4f'
Vec4f e = d - (pow2_23 + bias); // subtract magic number and bias
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:15: error: unknown type name 'Vec2d'
static inline Vec2d exponent_f(Vec2d const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:32: error: unknown type name 'Vec2d'
static inline Vec2d exponent_f(Vec2d const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:700:5: error: unknown type name 'Vec2uq'
Vec2uq a = reinterpret_i(x); // bit-cast x to integer
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:701:5: error: unknown type name 'Vec2uq'
Vec2uq b = a >> 52; // shift down exponent to low bits
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:702:5: error: unknown type name 'Vec2uq'
Vec2uq c = b | Vec2uq(upow2_52.i); // insert new exponent
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[ 1% 3/286] /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -MD -MT CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -MF CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o.d -o CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp
FAILED: CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o
/usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DUSE_LSD2 -D_USE_PTHREADS -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7 -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/yaml-cpp/include -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/after -I/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/system -I/usr/local/include -I/wrkdirs/usr/ports/biology/iqtree/work/.build -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -fopenmp -pthread -O3 -ffunction-sections -fdata-sections -I/usr/local/include/eigen3 -I/usr/local/include -D__SSE3 -D__AVX -mavx -MD -MT CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -MF CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o.d -o CMakeFiles/kernelavx.dir/tree/phylotreeavx.cpp.o -c /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp
c++: warning: argument unused during compilation: '-mavx' [-Wunused-command-line-argument]
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9:
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38:
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:35:
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectorclass.h:38:4: error: Please compile for the SSE2 instruction set or higher
#error Please compile for the SSE2 instruction set or higher
^
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9:
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:38:
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:8: error: unknown type name 'Vec2d'
inline Vec2d infinite_vec<Vec2d>() {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:65:27: error: use of undeclared identifier 'Vec2d'
inline Vec2d infinite_vec<Vec2d>() {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:8: error: unknown type name 'Vec2d'
inline Vec2d nan_vec<Vec2d>(int n) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_common.h:108:22: error: use of undeclared identifier 'Vec2d'
inline Vec2d nan_vec<Vec2d>(int n) {
^
In file included from /wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/tree/phylotreeavx.cpp:9:
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:15: error: unknown type name 'Vec4f'
static inline Vec4f exponent_f(Vec4f const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:674:32: error: unknown type name 'Vec4f'
static inline Vec4f exponent_f(Vec4f const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:681:11: error: unknown type name 'vm_ufi'; did you mean 'vm_udi'?
const vm_ufi upow2_23 = {pow2_23};
^~~~~~
vm_udi
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:667:7: note: 'vm_udi' declared here
union vm_udi {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:682:5: error: unknown type name 'Vec4ui'
Vec4ui a = reinterpret_i(x); // bit-cast x to integer
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:683:5: error: unknown type name 'Vec4ui'
Vec4ui b = a >> 23; // shift down exponent to low bits
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:5: error: unknown type name 'Vec4ui'
Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:684:20: error: use of undeclared identifier 'Vec4ui'
Vec4ui c = b | Vec4ui(upow2_23.i); // insert new exponent
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:685:5: error: unknown type name 'Vec4f'
Vec4f d = reinterpret_f(c); // bit-cast back to double
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:686:5: error: unknown type name 'Vec4f'
Vec4f e = d - (pow2_23 + bias); // subtract magic number and bias
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:15: error: unknown type name 'Vec2d'
static inline Vec2d exponent_f(Vec2d const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:691:32: error: unknown type name 'Vec2d'
static inline Vec2d exponent_f(Vec2d const & x) {
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:700:5: error: unknown type name 'Vec2uq'
Vec2uq a = reinterpret_i(x); // bit-cast x to integer
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:701:5: error: unknown type name 'Vec2uq'
Vec2uq b = a >> 52; // shift down exponent to low bits
^
/wrkdirs/usr/ports/biology/iqtree/work/iqtree2-2.2.2.7/vectorclass/vectormath_exp.h:702:5: error: unknown type name 'Vec2uq'
Vec2uq c = b | Vec2uq(upow2_52.i); // insert new exponent
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/iqtree